Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 2.2e-58 228.8 118 100.0
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 9.6e-30 133.7 97 71.1
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 1.6e-29 132.9 80 83.8
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 3.6e-29 131.7 80 85.0
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.1e-28 130.2 97 69.1
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 3.1e-28 128.6 81 80.2
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 4.0e-28 128.3 80 81.2
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 5.2e-28 127.9 80 80.0
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 6.9e-28 127.5 97 68.0
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 8.9e-28 127.1 80 80.0
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 8.9e-28 127.1 80 78.8
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 1.5e-27 126.3 97 64.9
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 2.0e-27 125.9 80 78.8
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 2.0e-27 125.9 80 78.8
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 2.6e-27 125.6 97 64.9
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 2.6e-27 125.6 80 78.8
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 2.6e-27 125.6 99 67.7
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 2.6e-27 125.6 80 78.8
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.4e-27 124.8 81 77.8
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.4e-27 124.8 81 77.8
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 5.8e-27 124.4 80 77.5
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 5.8e-27 124.4 80 78.8
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 5.8e-27 124.4 80 77.5
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 5.8e-27 124.4 97 64.9
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 5.8e-27 124.4 85 76.5
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 9.9e-27 123.6 80 77.5
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 1.3e-26 123.2 82 78.0
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.7e-26 122.9 82 80.5
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 2.2e-26 122.5 83 78.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 3.8e-26 121.7 97 63.9
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 3.8e-26 121.7 97 66.0
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 6.4e-26 120.9 80 73.8
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.1e-25 120.2 90 70.0
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.4e-25 119.8 119 58.0
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 1.9e-25 119.4 80 75.0
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.9e-25 119.4 80 76.2
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 2.4e-25 119.0 80 76.2
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.4e-25 119.0 80 76.2
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.4e-25 119.0 80 76.2
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 5.4e-25 117.9 80 75.0
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 5.4e-25 117.9 80 75.0
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 5.4e-25 117.9 80 75.0
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 7.1e-25 117.5 80 70.0
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 1.2e-24 116.7 97 62.9
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 1.2e-24 116.7 97 62.9
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.1e-24 115.9 81 71.6
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 2.1e-24 115.9 80 73.8
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.7e-24 115.5 80 75.0
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.8e-24 114.0 82 70.7
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 7.8e-24 114.0 78 74.4
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 1.0e-23 113.6 82 70.7
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.3e-23 113.2 81 69.1
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.3e-23 113.2 80 72.5
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.7e-23 112.8 81 69.1
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.3e-23 112.5 81 69.1
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 3.0e-23 112.1 80 71.2
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 3.9e-23 111.7 81 67.9
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 3.9e-23 111.7 81 72.8
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 8.7e-23 110.5 80 73.8
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 1.9e-22 109.4 80 71.2
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 3.3e-22 108.6 73 76.7
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 5.6e-22 107.8 80 71.2
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 5.6e-22 107.8 80 70.0
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 1.6e-21 106.3 99 60.6
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.1e-21 105.9 80 68.8
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 8.1e-21 104.0 72 68.1
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.8e-20 102.8 80 66.2
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 9.0e-20 100.5 80 66.2
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.0e-19 99.4 80 61.2
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 2.6e-19 99.0 80 66.2
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.5e-19 98.2 80 65.0
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 4.5e-19 98.2 101 50.5
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 4.9e-18 94.7 98 50.0
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.6e-16 89.7 80 60.0
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.6e-16 89.7 97 50.5
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.1e-16 89.4 81 56.8
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 2.1e-16 89.4 80 60.0
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 4.6e-16 88.2 90 51.1
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 1.0e-15 87.0 80 58.8
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 1.0e-15 87.0 91 51.6
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.0e-15 87.0 80 60.0
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.0e-15 87.0 80 58.8
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.3e-15 86.7 80 58.8
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.3e-15 86.7 80 58.8
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.3e-15 86.7 80 58.8
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 1.8e-15 86.3 80 58.8
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.3e-15 85.9 97 50.5
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.0e-15 85.5 80 57.5
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.0e-15 85.5 80 57.5
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 3.0e-15 85.5 80 56.2
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 3.9e-15 85.1 80 57.5
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 3.9e-15 85.1 80 58.8
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 3.9e-15 85.1 80 57.5
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 6.7e-15 84.3 80 57.5
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 1.1e-14 83.6 80 57.5
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.1e-14 83.6 80 55.0
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.1e-14 83.6 80 55.0
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 1.9e-14 82.8 97 48.5
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.5e-14 82.4 80 55.0
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 3.3e-14 82.0 80 56.2
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 3.3e-14 82.0 80 53.8
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 5.6e-14 81.3 47 80.9
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.6e-14 81.3 80 55.0
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 9.6e-14 80.5 80 50.0
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 9.6e-14 80.5 97 47.4
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 1.3e-13 80.1 97 47.4
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 2.1e-13 79.3 80 55.0
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 2.1e-13 79.3 80 53.8
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 2.1e-13 79.3 97 46.4
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.7e-13 78.6 80 55.0
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 3.7e-13 78.6 44 84.1
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 4.8e-13 78.2 80 52.5
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.4e-12 76.6 80 52.5
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.1e-12 75.5 80 53.8
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 2.0e-11 72.8 80 51.2
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 3.4e-11 72.0 60 60.0
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 4.5e-11 71.6 81 45.7
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 9.9e-11 70.5 44 72.7
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 9.9e-11 70.5 44 72.7
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.7e-10 69.7 97 46.4
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 8.4e-10 67.4 54 63.0
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 7.9e-08 60.8 72 41.7


User provided reference genes

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