Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10217 Nelumbo nucifera HOM05D000008 ORTHO05D001151 3.4e-29 131.0 64 100.0
Lj3g0022338 Lotus japonicus HOM05D000008 ORTHO05D001151 1.1e-08 62.8 36 86.1
TAR626G1530 Trochodendron aralioides HOM05D000008 ORTHO05D001151 1.1e-08 62.8 36 86.1
CiPaw.03G162100 Carya illinoinensis HOM05D000008 ORTHO05D001151 1.5e-08 62.4 30 96.7
COL.COLO4_27684 Corchorus olitorius HOM05D000008 ORTHO05D001151 1.5e-08 62.4 30 96.7
Duzib251G0940 Durio zibethinus HOM05D000008 ORTHO05D001151 1.5e-08 62.4 30 96.7
Nn1g07041 Nelumbo nucifera HOM05D000008 ORTHO05D001151 1.5e-08 62.4 30 96.7
Nn3g18543 Nelumbo nucifera HOM05D000008 ORTHO05D001151 1.5e-08 62.4 36 86.1
Thecc.02G312700 Theobroma cacao HOM05D000008 ORTHO05D001151 1.5e-08 62.4 30 96.7
Phvul.011G105600 Phaseolus vulgaris HOM05D000008 ORTHO05D001151 2.5e-08 61.6 36 83.3
Atru.chr6.3160 Acer truncatum HOM05D000008 ORTHO05D001151 3.3e-08 61.2 36 83.3
Actinidia39285 Actinidia chinensis HOM05D000008 ORTHO05D001151 3.3e-08 61.2 36 83.3
Psat0s785g0040 Pisum sativum HOM05D000008 ORTHO05D001151 3.3e-08 61.2 36 86.1
CSS0039428 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D001151 4.3e-08 60.8 36 83.3
CiPaw.09G087400 Carya illinoinensis HOM05D000008 ORTHO05D001151 4.3e-08 60.8 29 93.1
Dinv02742 Davidia involucrata HOM05D000008 ORTHO05D001151 4.3e-08 60.8 36 83.3
Dinv20020 Davidia involucrata HOM05D000008 ORTHO05D001151 4.3e-08 60.8 36 83.3
MBI02_g21863_MAGBIO Magnolia biondii HOM05D000008 ORTHO05D001151 4.3e-08 60.8 30 93.3
Prupe.3G219200 Prunus persica HOM05D000008 ORTHO05D001151 4.3e-08 60.8 30 93.3
PGR004G0365 Punica granatum HOM05D000008 ORTHO05D001151 4.3e-08 60.8 36 83.3
QL08p033621 Quercus lobata HOM05D000008 ORTHO05D001151 4.3e-08 60.8 29 93.1
GSVIVG01030609001 Vitis vinifera HOM05D000008 ORTHO05D001151 4.3e-08 60.8 30 93.3
Cfa014430 Carpinus fangiana HOM05D001264 ORTHO05D001167 5.6e-08 60.5 34 85.3
Cfa020406 Carpinus fangiana HOM05D001264 ORTHO05D001167 5.6e-08 60.5 30 93.3
CiPaw.12G126900 Carya illinoinensis HOM05D000008 ORTHO05D001151 5.6e-08 60.5 30 93.3
Haze_09624 Corylus avellana HOM05D000008 ORTHO05D001151 5.6e-08 60.5 30 93.3
Dinv17830 Davidia involucrata HOM05D000008 ORTHO05D001151 5.6e-08 60.5 30 93.3
Eucgr.A01720 Eucalyptus grandis HOM05D000008 ORTHO05D001151 5.6e-08 60.5 29 93.1
PSO541G6179 Papaver somniferum HOM05D000008 ORTHO05D001151 5.6e-08 60.5 30 93.3
PSO675G1663 Papaver somniferum HOM05D000008 ORTHO05D001151 5.6e-08 60.5 30 93.3
Potri.007G122800 Populus trichocarpa HOM05D000008 ORTHO05D001151 5.6e-08 60.5 36 80.6
Sabra07G0099400 Salix brachista HOM05D000008 ORTHO05D001151 5.6e-08 60.5 36 80.6
vmacro11760 Vaccinium macrocarpon HOM05D000008 ORTHO05D001151 5.6e-08 60.5 30 93.3
Glyma.06G303100 Glycine max HOM05D000008 ORTHO05D001151 7.3e-08 60.1 36 80.6
Glyma.12G100600 Glycine max HOM05D000008 ORTHO05D001151 7.3e-08 60.1 36 80.6
QL08p012780 Quercus lobata HOM05D000008 ORTHO05D001151 7.3e-08 60.1 29 93.1
QL08p012960 Quercus lobata HOM05D000008 ORTHO05D001151 7.3e-08 60.1 29 93.1
Rhsim06G0159100 Rhododendron simsii HOM05D000008 ORTHO05D001151 7.3e-08 60.1 28 96.4
TWI18G0553 Tripterygium wilfordii HOM05D000008 ORTHO05D001151 7.3e-08 60.1 30 90.0
Potri.017G037000 Populus trichocarpa HOM05D000008 ORTHO05D001151 9.5e-08 59.7 36 80.6
QL05p074951 Quercus lobata HOM05D000008 ORTHO05D001151 9.5e-08 59.7 29 89.7
QL93p0073_0483 Quercus lobata HOM05D000008 ORTHO05D001151 9.5e-08 59.7 29 89.7
Sabra17G0024200 Salix brachista HOM05D000008 ORTHO05D001151 9.5e-08 59.7 36 80.6
TPR.G19035 Trifolium pratense HOM05D000008 ORTHO05D001151 9.5e-08 59.7 36 80.6
CSS0033018 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D001151 1.2e-07 59.3 30 90.0
Potri.011G026300 Populus trichocarpa HOM05D000008 ORTHO05D001151 1.2e-07 59.3 30 90.0
Sabra11G0016900 Salix brachista HOM05D000008 ORTHO05D001151 1.2e-07 59.3 30 90.0
TWI36G1458 Tripterygium wilfordii HOM05D000008 ORTHO05D001151 1.2e-07 59.3 30 86.7
vmacro12223 Vaccinium macrocarpon HOM05D000008 ORTHO05D001151 1.2e-07 59.3 34 82.4
Actinidia09923 Actinidia chinensis HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
CiPaw.10G068400 Carya illinoinensis HOM05D000008 ORTHO05D001151 1.6e-07 58.9 29 89.7
Haze_12888 Corylus avellana HOM05D000008 ORTHO05D001151 1.6e-07 58.9 34 82.4
Duzib268G0615 Durio zibethinus HOM05D000008 ORTHO05D001151 1.6e-07 58.9 29 89.7
FvH4_6g43450 Fragaria vesca HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
FAN02G3670 Fragaria x ananassa HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
FAN05G2626 Fragaria x ananassa HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
FAN09G0221 Fragaria x ananassa HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
FAN14G3065 Fragaria x ananassa HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
FAN14G3112 Fragaria x ananassa HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
Medtr4g046737 Medicago truncatula HOM05D000008 ORTHO05D001151 1.6e-07 58.9 36 80.6
RcHm_v2.0_Chr2g0159921 Rosa chinensis HOM05D000008 ORTHO05D001151 1.6e-07 58.9 30 90.0
CANSAT64G2000 Cannabis sativa HOM05D000008 ORTHO05D001151 2.1e-07 58.5 30 86.7
Hma1.2p1_2714F.1_g327420 Hydrangea macrophylla HOM05D000008 ORTHO05D001151 2.1e-07 58.5 30 90.0
arahy.Tifrunner.gnm1.ann1.WHG5AA Arachis hypogaea HOM05D000008 ORTHO05D001151 2.8e-07 58.2 37 83.8
arahy.Tifrunner.gnm1.ann1.XL1L9T Arachis hypogaea HOM05D000008 ORTHO05D001151 2.8e-07 58.2 37 83.8
GSVIVG01012633001 Vitis vinifera HOM05D000008 ORTHO05D001151 2.8e-07 58.2 30 86.7
Manes.16G011800 Manihot esculenta HOM05D000008 ORTHO05D001151 3.6e-07 57.8 36 77.8
Hma1.2p1_0613F.1_g189090 Hydrangea macrophylla HOM05D000008 ORTHO05D001151 4.7e-07 57.4 36 80.6
Manes.16G007100 Manihot esculenta HOM05D000008 ORTHO05D001151 4.7e-07 57.4 28 89.3
Nn1g03626 Nelumbo nucifera HOM05D000008 ORTHO05D001151 4.7e-07 57.4 37 83.8
Rhsim02G0111800 Rhododendron simsii HOM05D000008 ORTHO05D001151 4.7e-07 57.4 36 80.6
TAR626G1685 Trochodendron aralioides HOM05D000008 ORTHO05D001151 4.7e-07 57.4 28 89.3
Manes.17G035600 Manihot esculenta HOM05D000008 ORTHO05D001151 6.2e-07 57.0 30 86.7
Thecc.07G051100 Theobroma cacao HOM05D000008 ORTHO05D001151 6.2e-07 57.0 30 83.3
TWI75G1246 Tripterygium wilfordii HOM05D000008 ORTHO05D001151 6.2e-07 57.0 28 89.3
Haze_06798 Corylus avellana HOM05D000008 ORTHO05D001151 8.1e-07 56.6 28 89.3
Gohir.A01G075400 Gossypium hirsutum HOM05D000008 ORTHO05D001151 8.1e-07 56.6 30 83.3
Gohir.A06G208000 Gossypium hirsutum HOM05D000008 ORTHO05D001151 8.1e-07 56.6 30 83.3
Gohir.D01G062700 Gossypium hirsutum HOM05D000008 ORTHO05D001151 8.1e-07 56.6 30 83.3
Gohir.D06G213100 Gossypium hirsutum HOM05D000008 ORTHO05D001151 8.1e-07 56.6 30 83.3
Gorai.002G083400 Gossypium raimondii HOM05D000008 ORTHO05D001151 8.1e-07 56.6 30 83.3
Gorai.010G253000 Gossypium raimondii HOM05D000008 ORTHO05D001151 8.1e-07 56.6 30 83.3
Lj3g0013670 Lotus japonicus HOM05D000008 ORTHO05D001151 8.1e-07 56.6 28 89.3
MD05G1341500 Malus domestica HOM05D000008 ORTHO05D001151 8.1e-07 56.6 36 75.0
PSO478G1752 Papaver somniferum HOM05D000008 ORTHO05D001151 8.1e-07 56.6 28 89.3
PSO782G3744 Papaver somniferum HOM05D000008 ORTHO05D001151 8.1e-07 56.6 28 89.3
Ciclev10017220m.g Citrus clementina HOM05D000008 ORTHO05D001151 1.1e-06 56.2 34 76.5
Oeu048072.1 Olea europaea HOM05D002680 ORTHO05D001151 1.1e-06 56.2 34 76.5
arahy.Tifrunner.gnm1.ann1.LQ8VWD Arachis hypogaea HOM05D000008 ORTHO05D001151 1.4e-06 55.8 27 88.9
CAN.G80.35 Capsicum annuum HOM05D000008 ORTHO05D001151 1.4e-06 55.8 30 86.7
Duzib235G0636 Durio zibethinus HOM05D000008 ORTHO05D001151 1.4e-06 55.8 36 72.2
Glyma.12G195200 Glycine max HOM05D000008 ORTHO05D001151 1.4e-06 55.8 28 89.3
Potri.004G015100 Populus trichocarpa HOM05D000008 ORTHO05D001151 1.4e-06 55.8 29 82.8
Potri.004G021300 Populus trichocarpa HOM05D000008 ORTHO05D001151 1.4e-06 55.8 30 86.7
PGR042G1777 Punica granatum HOM05D000008 ORTHO05D001151 1.4e-06 55.8 28 85.7
Sabra04G0011800 Salix brachista HOM05D000008 ORTHO05D001151 1.4e-06 55.8 30 86.7
Atru.chr10.2225 Acer truncatum HOM05D000008 ORTHO05D001151 1.8e-06 55.5 28 82.1
Lalb_Chr03g0028831 Lupinus albus HOM05D000008 ORTHO05D001151 1.8e-06 55.5 35 77.1
Nn1g07130 Nelumbo nucifera HOM05D000008 ORTHO05D001151 1.8e-06 55.5 28 85.7
Aqoxy1G03683 Aquilegia oxysepala HOM05D000008 ORTHO05D001151 2.3e-06 55.1 30 83.3
CiPaw.11G184800 Carya illinoinensis HOM05D000008 ORTHO05D001151 2.3e-06 55.1 27 88.9
Duzib192G0556 Durio zibethinus HOM05D000008 ORTHO05D001151 2.3e-06 55.1 27 88.9
Duzib235G0900 Durio zibethinus HOM05D000008 ORTHO05D001151 2.3e-06 55.1 27 88.9
Glyma.13G307300 Glycine max HOM05D000008 ORTHO05D001151 2.3e-06 55.1 28 85.7
Manes.13G072300 Manihot esculenta HOM05D000008 ORTHO05D001151 3.1e-06 54.7 36 72.2
Actinidia26913 Actinidia chinensis HOM05D000008 ORTHO05D001151 4.0e-06 54.3 28 82.1
Actinidia28668 Actinidia chinensis HOM05D000008 ORTHO05D001151 4.0e-06 54.3 28 82.1
Aqoxy1G02150 Aquilegia oxysepala HOM05D000008 ORTHO05D001151 4.0e-06 54.3 28 82.1
Phvul.005G114100 Phaseolus vulgaris HOM05D000008 ORTHO05D001151 4.0e-06 54.3 28 85.7
SGA_v2.0_scaffold7G03880 Striga asiatica HOM05D000008 ORTHO05D001151 4.0e-06 54.3 60 51.7
TWI38G1835 Tripterygium wilfordii HOM05D000008 ORTHO05D001151 4.0e-06 54.3 28 82.1
arahy.Tifrunner.gnm1.ann1.S7LJ0Z Arachis hypogaea HOM05D000008 ORTHO05D001151 5.2e-06 53.9 27 85.2
Cfa000221 Carpinus fangiana HOM05D000008 ORTHO05D001151 5.2e-06 53.9 28 85.7
CDE05G2587 Ceratophyllum demersum HOM05D000008 ORTHO05D001151 5.2e-06 53.9 26 88.5
Duzib160G0189 Durio zibethinus HOM05D000008 ORTHO05D001151 5.2e-06 53.9 34 70.6
Lsat_1_v5_gn_4_68300 Lactuca sativa HOM05D000008 ORTHO05D001151 5.2e-06 53.9 26 88.5
QL05p073168 Quercus lobata HOM05D000008 ORTHO05D001151 5.2e-06 53.9 28 82.1
CANSAT56G1840 Cannabis sativa HOM05D000008 ORTHO05D001151 6.8e-06 53.5 26 88.5
Cfa000270 Carpinus fangiana HOM05D000008 ORTHO05D001151 6.8e-06 53.5 31 80.6
Cc02_g11680 Coffea canephora HOM05D000008 ORTHO05D001151 6.8e-06 53.5 29 79.3
Eucgr.K00803 Eucalyptus grandis HOM05D000008 ORTHO05D001151 6.8e-06 53.5 25 92.0
Peaxi162Scf00521g00814 Petunia axillaris HOM05D000008 ORTHO05D001151 6.8e-06 53.5 36 72.2


User provided reference genes

Program Settings