Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.2e-18 93.2 43 100.0
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.2e-18 93.2 43 100.0
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.2e-18 93.2 43 100.0
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.2e-18 93.2 43 100.0
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.2e-18 93.2 43 100.0
Phvul.009G038333 Phaseolus vulgaris HOM05D007952 ORTHO05D009823 4.4e-17 90.1 43 97.7
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 7.5e-17 89.4 40 100.0
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 7.5e-17 89.4 40 100.0
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 7.5e-17 89.4 40 100.0
Nn1g08228 Nelumbo nucifera HOM05D007952 ORTHO05D009823 7.5e-17 89.4 43 95.3
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 9.8e-17 89.0 40 97.5
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 6.4e-16 86.3 40 97.5
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 5.4e-15 83.2 41 92.7
arahy.Tifrunner.gnm1.ann1.60YYL0 Arachis hypogaea HOM05D010190 ORTHO05D009823 3.5e-14 80.5 39 92.3
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.3e-13 77.8 35 100.0
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.3e-13 77.8 35 100.0
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.3e-13 77.8 35 100.0
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.3e-13 77.8 35 100.0
arahy.Tifrunner.gnm1.ann1.9E5EUV Arachis hypogaea HOM05D000388 ORTHO05D000473 1.5e-12 75.1 39 89.7
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 1.4e-10 68.6 31 96.8
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 1.4e-10 68.6 31 96.8
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 5.2e-10 66.6 31 96.8
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 8.9e-10 65.9 43 74.4
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 8.9e-10 65.9 37 86.5
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 8.9e-10 65.9 37 86.5
Atru.chr9.2550 Acer truncatum HOM05D010190 ORTHO05D009823 1.3e-08 62.0 37 78.4
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.7e-08 61.6 38 73.7
Oeu011728.3 Olea europaea HOM05D002681 ORTHO05D003372 1.7e-08 61.6 29 96.6
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 2.2e-08 61.2 31 90.3
Medtr3g028290 Medicago truncatula HOM05D007952 ORTHO05D009823 2.2e-08 61.2 30 90.0
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 2.2e-08 61.2 37 81.1
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 3.7e-08 60.5 28 96.4
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 3.7e-08 60.5 37 73.0
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 8.4e-08 59.3 27 100.0
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 8.4e-08 59.3 27 100.0
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 8.4e-08 59.3 27 100.0
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 8.4e-08 59.3 27 100.0
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 8.4e-08 59.3 27 100.0
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 8.4e-08 59.3 27 100.0
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 8.4e-08 59.3 27 100.0
Oeu000007.1 Olea europaea HOM05D007952 ORTHO05D009823 1.9e-07 58.2 40 67.5
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 2.4e-07 57.8 26 100.0
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 2.4e-07 57.8 27 96.3
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.4e-07 57.8 27 96.3
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 4.1e-07 57.0 27 96.3
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 5.4e-07 56.6 26 96.2
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 7.1e-07 56.2 27 96.3
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 9.2e-07 55.8 28 89.3
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 1.2e-06 55.5 26 96.2
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.6e-06 55.1 40 67.5
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 2.1e-06 54.7 27 92.6
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 3.5e-06 53.9 27 96.3


User provided reference genes

Program Settings