Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn228s45480 Nelumbo nucifera HOM05D009387 ORTHO05D011225 8.0e-29 129.8 68 100.0
Nn5g27461 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.5e-22 109.0 60 96.7
Nn5g27463 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.5e-22 109.0 60 96.7
Nn5g27471 Nelumbo nucifera HOM05D000115 ORTHO05D011225 5.5e-22 107.1 58 96.6
Nn172s44495 Nelumbo nucifera HOM05D009387 ORTHO05D011225 7.2e-22 106.7 68 85.3
Nn3g20205 Nelumbo nucifera HOM05D009387 ORTHO05D011225 7.2e-22 106.7 68 85.3
Nn1g04219 Nelumbo nucifera HOM05D001236 ORTHO05D011225 1.2e-19 99.4 59 86.4
Nn1g08283 Nelumbo nucifera HOM05D001236 ORTHO05D001090 2.8e-18 94.7 59 83.1
Nn3g20210 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.1e-17 92.8 51 96.1
Nn109s43304 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.3e-15 85.9 46 95.7
Nn228s45479 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.3e-15 85.9 48 93.8
Nn5g27465 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.3e-15 85.9 46 95.7
Nn5g27470 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.3e-15 85.9 48 93.8
Nn132s43803 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.0e-15 84.0 51 92.2
Nn2g14708 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.0e-15 84.0 51 92.2
Nn2g14711 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.0e-15 84.0 51 92.2
Nn2g14715 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.0e-15 84.0 51 92.2
Nn2g14720 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.0e-15 84.0 51 92.2
Nn2g14721 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.0e-15 84.0 51 92.2
Nn2g16005 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.0e-15 84.0 51 92.2
Nn025s41559 Nelumbo nucifera HOM05D009387 ORTHO05D011225 3.2e-14 81.3 50 84.0
Nn2g14724 Nelumbo nucifera HOM05D009387 ORTHO05D011225 3.2e-14 81.3 50 84.0
Nn035s41622 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.5e-14 80.5 45 91.1
Nn1g07981 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g08001 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g08009 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g08013 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g08014 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g08020 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g08021 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g08024 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.7e-13 78.2 46 84.8
Nn1g07967 Nelumbo nucifera HOM05D009387 ORTHO05D011225 8.0e-13 76.6 45 84.4
Potri.002G251600 Populus trichocarpa HOM05D001236 ORTHO05D001090 1.8e-12 75.5 59 61.0
Nn1g04326 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.3e-12 75.1 47 80.9
Sabra02G0191200 Salix brachista HOM05D001236 ORTHO05D001090 4.0e-12 74.3 59 59.3
MBI07_g35532_MAGBIO Magnolia biondii HOM05D001236 ORTHO05D001090 6.8e-12 73.6 59 67.8
Manes.12G054300 Manihot esculenta HOM05D001236 ORTHO05D001090 2.6e-11 71.6 59 59.3
TAR365G0756 Trochodendron aralioides HOM05D001236 ORTHO05D001090 2.6e-11 71.6 59 64.4
Manes.13G054500 Manihot esculenta HOM05D001236 ORTHO05D001090 3.4e-11 71.2 59 59.3
Glyma.16G083100 Glycine max HOM05D001236 ORTHO05D001090 2.2e-10 68.6 59 57.6
Sed0000162 Sechium edule HOM05D001236 ORTHO05D001090 2.8e-10 68.2 58 53.4
TWI36G0180 Tripterygium wilfordii HOM05D001236 ORTHO05D001090 2.8e-10 68.2 59 55.9
TWI75G1139 Tripterygium wilfordii HOM05D001236 ORTHO05D001090 2.8e-10 68.2 59 55.9
Glyma.03G090000 Glycine max HOM05D001236 ORTHO05D001090 4.8e-10 67.4 59 55.9
HanXRQChr16g0526941 Helianthus annuus HOM05D001236 ORTHO05D001090 4.8e-10 67.4 59 59.3
Nn5g27462 Nelumbo nucifera HOM05D009387 ORTHO05D011225 8.3e-10 66.6 35 97.1
PSO017G1161 Papaver somniferum HOM05D001236 ORTHO05D001090 8.3e-10 66.6 59 59.3
PSO675G1730 Papaver somniferum HOM05D001236 ORTHO05D001090 8.3e-10 66.6 59 59.3
CSS0002372 Camellia sinensis var. sinensis HOM05D001236 ORTHO05D001090 1.1e-09 66.2 59 54.2
CSS0024789 Camellia sinensis var. sinensis HOM05D001236 ORTHO05D001090 1.1e-09 66.2 59 54.2
Psat4g206600 Pisum sativum HOM05D001236 ORTHO05D001090 1.1e-09 66.2 59 54.2
VMungo0331G1776 Vigna mungo HOM05D001236 ORTHO05D001090 1.1e-09 66.2 59 55.9
CANSAT01G1496 Cannabis sativa HOM05D001236 ORTHO05D001090 1.8e-09 65.5 60 61.7
CDE05G0796 Ceratophyllum demersum HOM05D001236 ORTHO05D001090 1.8e-09 65.5 59 57.6
Lsat_1_v5_gn_8_98080 Lactuca sativa HOM05D001236 ORTHO05D001090 1.8e-09 65.5 59 57.6
Phvul.010G031500 Phaseolus vulgaris HOM05D001236 ORTHO05D001090 1.8e-09 65.5 59 55.9
Actinidia23359 Actinidia chinensis HOM05D001236 ORTHO05D001090 5.4e-09 63.9 59 52.5
Cpa.g.sc8.71 Carica papaya HOM05D001236 ORTHO05D001090 5.4e-09 63.9 59 55.9
Ca_23186_v3 Cicer arietinum L. HOM05D001236 ORTHO05D001090 5.4e-09 63.9 59 54.2
Ca_30804_v3 Cicer arietinum L. HOM05D001236 ORTHO05D001090 5.4e-09 63.9 59 54.2
TPR.G28989 Trifolium pratense HOM05D001236 ORTHO05D001090 7.0e-09 63.5 59 54.2
Haze_03499 Corylus avellana HOM05D001236 ORTHO05D001090 9.1e-09 63.2 59 52.5
Eucgr.K02088 Eucalyptus grandis HOM05D001236 ORTHO05D001090 9.1e-09 63.2 59 54.2
ATR0686G225 Amborella trichopoda HOM05D001236 ORTHO05D001090 1.2e-08 62.8 59 57.6
Dinv10441 Davidia involucrata HOM05D001236 ORTHO05D001090 1.2e-08 62.8 59 50.8
Lj1A101G43 Lonicera japonica HOM05D001236 ORTHO05D001090 1.6e-08 62.4 59 50.8
Phvul.008G136800 Phaseolus vulgaris HOM05D001236 ORTHO05D001090 1.6e-08 62.4 59 55.9
QL09p046418 Quercus lobata HOM05D001236 ORTHO05D001090 1.6e-08 62.4 54 59.3
Sed0007167 Sechium edule HOM05D001236 ORTHO05D001090 1.6e-08 62.4 59 52.5
Hund09469 Selenicereus undatus HOM05D001236 ORTHO05D001090 1.6e-08 62.4 59 55.9
CiPaw.14G043700 Carya illinoinensis HOM05D001236 ORTHO05D001090 2.0e-08 62.0 60 55.0
ClCG09G008200 Citrullus lanatus HOM05D001236 ORTHO05D001090 2.0e-08 62.0 59 50.8
CsaV3_7G026850 Cucumis sativus L. HOM05D001236 ORTHO05D001090 2.0e-08 62.0 59 52.5
ECA236G0241 Erigeron canadensis HOM05D001236 ORTHO05D001090 2.0e-08 62.0 59 52.5
Medtr8g011460 Medicago truncatula HOM05D001236 ORTHO05D001090 2.0e-08 62.0 59 52.5
PGR044G1189 Punica granatum HOM05D001236 ORTHO05D001090 2.0e-08 62.0 59 52.5
arahy.Tifrunner.gnm1.ann1.U2XTER Arachis hypogaea HOM05D001236 ORTHO05D001090 2.7e-08 61.6 59 55.9
arahy.Tifrunner.gnm1.ann1.ZPNK8K Arachis hypogaea HOM05D001236 ORTHO05D001090 2.7e-08 61.6 59 55.9
Lalb_Chr19g0126131 Lupinus albus HOM05D001236 ORTHO05D001090 2.7e-08 61.6 59 52.5
Rhsim13G0052800 Rhododendron simsii HOM05D001236 ORTHO05D001090 2.7e-08 61.6 59 52.5
Thecc.01G210900 Theobroma cacao HOM05D001236 ORTHO05D001090 2.7e-08 61.6 59 50.8
VMungo1383G2458 Vigna mungo HOM05D001236 ORTHO05D001090 2.7e-08 61.6 59 54.2
MELO3C012727.2 Cucumis melo HOM05D001236 ORTHO05D001090 3.5e-08 61.2 59 50.8
Gohir.D11G148900 Gossypium hirsutum HOM05D001236 ORTHO05D001090 3.5e-08 61.2 59 50.8
Lj3g0008493 Lotus japonicus HOM05D001236 ORTHO05D001090 3.5e-08 61.2 58 53.4
vmacro02817 Vaccinium macrocarpon HOM05D001236 ORTHO05D001090 4.5e-08 60.8 59 54.2
Actinidia34542 Actinidia chinensis HOM05D001236 ORTHO05D001090 5.9e-08 60.5 59 50.8
Ciclev10014518m.g Citrus clementina HOM05D001236 ORTHO05D001090 5.9e-08 60.5 59 49.2
Glyma.08G344100 Glycine max HOM05D001236 ORTHO05D001090 5.9e-08 60.5 59 52.5
Gohir.A11G142600 Gossypium hirsutum HOM05D001236 ORTHO05D001090 5.9e-08 60.5 59 50.8
Gorai.007G159700 Gossypium raimondii HOM05D001236 ORTHO05D001090 5.9e-08 60.5 59 50.8
Duzib138G1660 Durio zibethinus HOM05D001236 ORTHO05D001090 7.7e-08 60.1 59 49.2
Hund02796 Selenicereus undatus HOM05D001236 ORTHO05D001090 7.7e-08 60.1 59 55.9
TPR.G26821 Trifolium pratense HOM05D001236 ORTHO05D001090 1.0e-07 59.7 59 50.8
Actinidia23796 Actinidia chinensis HOM05D001236 ORTHO05D001090 1.3e-07 59.3 59 49.2
Lj2A1117G16 Lonicera japonica HOM05D001236 ORTHO05D001090 1.3e-07 59.3 59 50.8
Psat3g150960 Pisum sativum HOM05D001236 ORTHO05D001090 1.3e-07 59.3 59 52.5
CDE05G1279 Ceratophyllum demersum HOM05D001236 ORTHO05D001090 1.7e-07 58.9 59 52.5
Medtr7g052820 Medicago truncatula HOM05D001236 ORTHO05D001090 2.3e-07 58.5 59 52.5
THA.LOC104802644 Tarenaya hassleriana HOM05D001236 ORTHO05D001090 2.3e-07 58.5 60 53.3
Ah.02g111150 Amaranthus hybridus HOM05D001236 ORTHO05D001090 6.6e-07 57.0 59 50.8
Atru.chr6.3544 Acer truncatum HOM05D001236 ORTHO05D001090 8.6e-07 56.6 55 47.3
HanXRQChr16g0523381 Helianthus annuus HOM05D001236 ORTHO05D001090 8.6e-07 56.6 59 54.2
AUR62008120 Chenopodium quinoa HOM05D001236 ORTHO05D001090 1.1e-06 56.2 59 49.2
Cc01_g16120 Coffea canephora HOM05D001236 ORTHO05D001090 1.1e-06 56.2 60 53.3
Sc05g0001750 Simmondsia chinensis HOM05D001236 ORTHO05D001090 1.1e-06 56.2 59 47.5
PGSC0003DMG400013942 Solanum tuberosum HOM05D001236 ORTHO05D001090 1.1e-06 56.2 59 47.5
EL10Ac5g10624 Beta vulgaris HOM05D001236 ORTHO05D001090 1.5e-06 55.8 59 50.8
AUR62028698 Chenopodium quinoa HOM05D001236 ORTHO05D001090 1.9e-06 55.5 59 49.2
Dinv28810 Davidia involucrata HOM05D001236 ORTHO05D001090 1.9e-06 55.5 59 45.8
FAN24G3363 Fragaria x ananassa HOM05D001236 ORTHO05D001090 2.5e-06 55.1 60 46.7
Peaxi162Scf00335g00076 Petunia axillaris HOM05D001236 ORTHO05D001090 2.5e-06 55.1 59 50.8
Nitab4.5_0000038g0140 Nicotiana tabacum HOM05D001236 ORTHO05D001090 3.3e-06 54.7 59 47.5
Gohir.D07G167300 Gossypium hirsutum HOM05D001236 ORTHO05D001090 4.2e-06 54.3 59 47.5
Gorai.N003200 Gossypium raimondii HOM05D001236 ORTHO05D001090 4.2e-06 54.3 59 47.5
Gohir.A07G159100 Gossypium hirsutum HOM05D001236 ORTHO05D001090 5.5e-06 53.9 59 47.5
DCAR_018620 Daucus carota HOM05D001236 ORTHO05D001090 7.2e-06 53.5 59 44.1
SalBow6G4306 Salvia bowleyana HOM05D001236 ORTHO05D001090 7.2e-06 53.5 60 53.3
Solyc09g056170.3 Solanum lycopersicum HOM05D001236 ORTHO05D001090 7.2e-06 53.5 59 47.5
Sopen06g034460 Solanum pennellii HOM05D001236 ORTHO05D001090 7.2e-06 53.5 59 44.1
Sopen09g019470 Solanum pennellii HOM05D001236 ORTHO05D001090 7.2e-06 53.5 59 47.5
SGA_v2.0_scaffold29G12074 Striga asiatica HOM05D001236 ORTHO05D001090 7.2e-06 53.5 61 50.8


User provided reference genes

Program Settings