Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.3e-68 261.5 130 100.0
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.3e-68 261.5 130 100.0
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.3e-68 261.5 130 100.0
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.4e-66 255.4 135 96.3
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 3.7e-59 231.5 134 89.6
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 3.7e-59 231.5 134 89.6
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.5e-47 193.0 143 74.8
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 5.8e-44 181.0 134 76.9
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 3.2e-42 175.3 141 69.5
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 8.6e-40 167.2 107 83.2
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 9.5e-39 163.7 117 76.1
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 1.2e-38 163.3 107 82.2
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 1.2e-38 163.3 107 78.5
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 1.1e-37 160.2 86 95.3
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 3.1e-37 158.7 105 81.0
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 5.2e-37 157.9 109 77.1
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 9.8e-36 153.7 165 57.6
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 1.3e-35 153.3 105 79.0
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.9e-35 151.4 107 77.6
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.0e-34 147.5 108 75.9
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 1.2e-33 146.7 96 83.3
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 1.2e-33 146.7 96 83.3
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 1.2e-33 146.7 96 83.3
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 1.2e-33 146.7 96 83.3
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 1.2e-33 146.7 96 83.3
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 1.2e-33 146.7 96 83.3
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 2.1e-33 146.0 107 75.7
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 3.5e-33 145.2 96 82.3
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 6.0e-33 144.4 99 76.8
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 3.0e-32 142.1 96 81.2
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 3.3e-31 138.7 96 78.1
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-30 136.7 96 78.1
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.6e-30 136.3 96 77.1
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 2.1e-30 136.0 83 86.7
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 4.7e-30 134.8 83 85.5
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 4.7e-30 134.8 83 85.5
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 6.2e-30 134.4 81 87.7
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.1e-29 133.7 102 73.5
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 3.1e-29 132.1 102 71.6
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 5.2e-29 131.3 84 85.7
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 5.2e-29 131.3 101 68.3
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 2.6e-28 129.0 96 75.0
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 9.9e-28 127.1 96 71.9
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 1.7e-27 126.3 190 43.7
Sopen02g009080 Solanum pennellii HOM05D004182 ORTHO05D007321 1.4e-26 123.2 137 55.5
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 1.9e-26 122.9 85 80.0
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 2.1e-25 119.4 95 69.5
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 6.0e-25 117.9 91 73.6
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 7.8e-25 117.5 83 74.7
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 1.1e-23 113.6 109 62.4
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-21 105.9 101 61.4
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.4e-20 101.7 58 89.7
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.4e-20 101.7 58 89.7
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.4e-20 101.7 58 89.7
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.4e-20 101.7 58 89.7
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.4e-20 101.7 58 89.7
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.1e-18 97.1 59 88.1
arahy.Tifrunner.gnm1.ann1.Y35SJI Arachis hypogaea HOM05D004182 ORTHO05D007321 1.9e-18 96.3 106 53.8
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 3.2e-18 95.5 60 83.3
BolSC35t60712H Brassica oleracea HOM05D004182 ORTHO05D007321 1.6e-17 93.2 54 87.0
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 1.6e-17 93.2 54 87.0
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.7e-17 92.4 62 77.4
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 3.5e-17 92.0 62 77.4
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 4.6e-17 91.7 66 75.8
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 6.0e-17 91.3 58 84.5
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 6.0e-17 91.3 58 84.5
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 6.0e-17 91.3 58 84.5
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 6.0e-17 91.3 58 84.5
Atru.chr6.228 Acer truncatum HOM05D004182 ORTHO05D004271 7.8e-17 90.9 53 86.8
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 1.0e-16 90.5 58 81.0
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 1.0e-16 90.5 58 81.0
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 1.0e-16 90.5 58 81.0
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 1.7e-16 89.7 58 81.0
Glyma.03G084500 Glycine max HOM05D004182 ORTHO05D007321 1.7e-16 89.7 71 70.4
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.7e-16 89.7 60 80.0
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 2.3e-16 89.4 58 79.3
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.3e-16 89.4 58 81.0
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 3.0e-16 89.0 69 71.0
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 3.0e-16 89.0 58 79.3
BraSC58t46465Z Brassica rapa HOM05D004182 ORTHO05D007321 3.0e-16 89.0 61 75.4
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 3.0e-16 89.0 58 81.0
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 3.0e-16 89.0 58 82.8
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 3.0e-16 89.0 58 82.8
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 5.1e-16 88.2 58 81.0
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 6.6e-16 87.8 50 90.0
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.6e-16 87.8 58 81.0
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 8.7e-16 87.4 58 79.3
BraSC143t45651Z Brassica rapa HOM05D004182 ORTHO05D007321 8.7e-16 87.4 60 75.0
Gohir.A05G323708 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.5e-15 86.7 50 86.0
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 3.3e-15 85.5 62 72.6
BraSC59t46543Z Brassica rapa HOM05D004182 ORTHO05D007321 4.3e-15 85.1 64 73.4
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 4.3e-15 85.1 58 81.0
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 4.3e-15 85.1 58 79.3
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 1.3e-14 83.6 100 52.0
arahy.Tifrunner.gnm1.ann1.P0IFIP Arachis hypogaea HOM05D004182 ORTHO05D007321 6.2e-14 81.3 50 82.0
VMungo1127G1475 Vigna mungo HOM05D000959 ORTHO05D000775 1.4e-13 80.1 58 72.4
Atru.chr1.3411 Acer truncatum HOM05D008259 ORTHO05D007321 1.8e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.0KS2YP Arachis hypogaea HOM05D004182 ORTHO05D007321 1.8e-13 79.7 45 84.4
arahy.Tifrunner.gnm1.ann1.1MX66Y Arachis hypogaea HOM05D008259 ORTHO05D010449 1.8e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 1.8e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.A6TYH4 Arachis hypogaea HOM05D001966 ORTHO05D010449 1.8e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.EPN6WV Arachis hypogaea HOM05D001966 ORTHO05D010449 1.8e-13 79.7 37 100.0
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 1.8e-13 79.7 37 100.0
EL10As15g24132 Beta vulgaris HOM05D008259 ORTHO05D010449 1.8e-13 79.7 37 100.0
SHI36541 Sapria himalayana HOM05D001966 ORTHO05D010449 1.8e-13 79.7 37 100.0
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.8e-13 79.7 37 100.0
Sopen11g020180 Solanum pennellii HOM05D001966 ORTHO05D010127 3.1e-13 79.0 57 70.2
arahy.Tifrunner.gnm1.ann1.CT1WFL Arachis hypogaea HOM05D008259 ORTHO05D010449 6.9e-13 77.8 36 100.0
arahy.Tifrunner.gnm1.ann1.F9I1DV Arachis hypogaea HOM05D008259 ORTHO05D010449 6.9e-13 77.8 36 100.0
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 6.9e-13 77.8 61 67.2
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 6.9e-13 77.8 47 87.2
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-12 77.0 58 74.1
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 1.2e-12 77.0 40 92.5
arahy.Tifrunner.gnm1.ann1.K9UDI5 Arachis hypogaea HOM05D008259 ORTHO05D010449 1.5e-12 76.6 36 97.2
Lj4g0021959 Lotus japonicus HOM05D008259 ORTHO05D010449 1.5e-12 76.6 37 97.3
Sopen09g015240 Solanum pennellii HOM05D000004 ORTHO05D011466 1.5e-12 76.6 47 78.7
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.0e-12 76.3 58 72.4
VMungo0720G0883 Vigna mungo HOM05D004182 ORTHO05D007321 2.6e-12 75.9 45 82.2
arahy.Tifrunner.gnm1.ann1.L1GII0 Arachis hypogaea HOM05D008259 ORTHO05D010449 4.4e-12 75.1 37 94.6
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 4.4e-12 75.1 60 63.3
Gorai.007G250500 Gossypium raimondii HOM05D001966 ORTHO05D010449 7.6e-12 74.3 37 89.2
Gorai.007G258700 Gossypium raimondii HOM05D004182 ORTHO05D007321 9.9e-12 73.9 46 82.6
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 3.8e-11 72.0 52 76.9
arahy.Tifrunner.gnm1.ann1.5LAD0A Arachis hypogaea HOM05D004182 ORTHO05D007321 3.2e-10 68.9 70 57.1
Gohir.D10G118433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 7.1e-10 67.8 50 66.0
Gohir.A07G125450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 9.3e-10 67.4 50 70.0
Gohir.D11G237220 Gossypium hirsutum HOM05D001966 ORTHO05D010449 1.2e-09 67.0 33 87.9
Phvul.007G166000 Phaseolus vulgaris HOM05D008259 ORTHO05D010449 1.6e-09 66.6 33 93.9
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 1.6e-09 66.6 43 81.4
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 2.1e-09 66.2 58 65.5
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 2.1e-09 66.2 58 65.5
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 2.1e-09 66.2 58 65.5
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 2.1e-09 66.2 58 65.5
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 4.6e-09 65.1 123 43.9
HPP92_028384 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.0e-08 63.9 39 87.2
HPP92_028405 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.0e-08 63.9 39 87.2
HPP92_028414 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.0e-08 63.9 39 87.2
HPP92_028420 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.0e-08 63.9 39 87.2
HPP92_028429 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.0e-08 63.9 39 87.2
HPP92_028433 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.0e-08 63.9 39 87.2
ECA247G0006 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.3e-08 62.8 43 81.4
arahy.Tifrunner.gnm1.ann1.YI1HYY Arachis hypogaea HOM05D008259 ORTHO05D010449 3.9e-08 62.0 28 100.0
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.9e-08 62.0 36 80.6
FAN26G2239 Fragaria x ananassa HOM05D004182 ORTHO05D010449 1.1e-07 60.5 36 77.8
Glyma.01G163400 Glycine max HOM05D004182 ORTHO05D007321 1.1e-07 60.5 50 68.0
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 1.5e-07 60.1 55 60.0
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 1.9e-07 59.7 123 42.3
Cpa.g.sc76.14 Carica papaya HOM05D004182 ORTHO05D007321 7.3e-07 57.8 51 64.7
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 9.6e-07 57.4 55 61.8
Nn8g40575 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.8e-06 55.8 38 73.7
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 4.8e-06 55.1 25 100.0
SEGI_06057 Sequoiadendron giganteum HOM05D033036 ORTHO05D036140 8.1e-06 54.3 25 96.0
SEGI_13516 Sequoiadendron giganteum HOM05D004182 ORTHO05D007321 8.1e-06 54.3 25 96.0
SEGI_24666 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 8.1e-06 54.3 25 96.0
SEGI_31611 Sequoiadendron giganteum HOM05D001966 ORTHO05D011119 8.1e-06 54.3 25 96.0


User provided reference genes

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