Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn117s43415 Nelumbo nucifera HOM05D008814 ORTHO05D010812 2.0e-126 455.7 218 100.0
Nn1g10110 Nelumbo nucifera HOM05D008814 ORTHO05D010812 2.0e-126 455.7 218 100.0
Nn1g10192 Nelumbo nucifera HOM05D008814 ORTHO05D010812 2.0e-126 455.7 218 100.0
CAN.G960.18 Capsicum annuum HOM05D008814 ORTHO05D010812 5.1e-53 211.8 112 94.6
Solyc00g500343.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 9.6e-52 207.6 112 93.8
Solyc08g036500.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 9.6e-52 207.6 112 93.8
CAN.G1109.2 Capsicum annuum HOM05D008814 ORTHO05D010812 1.8e-50 203.4 110 92.7
PGSC0003DMG400033609 Solanum tuberosum HOM05D008814 ORTHO05D010812 8.4e-48 194.5 112 88.4
CAN.G1.21 Capsicum annuum HOM05D008814 ORTHO05D010812 4.2e-47 192.2 112 87.5
CsaV3_7G023800 Cucumis sativus L. HOM05D008814 ORTHO05D010812 1.1e-34 151.0 82 89.0
GSVIVG01005452001 Vitis vinifera HOM05D008814 ORTHO05D010812 4.1e-34 149.1 131 63.4
CAN.G85.24 Capsicum annuum HOM05D005210 ORTHO05D010286 5.9e-33 145.2 163 52.8
Nitab4.5_0000172g1910 Nicotiana tabacum HOM05D008814 ORTHO05D010812 2.2e-32 143.3 95 73.7
BcaC02g09030 Brassica carinata HOM05D008814 ORTHO05D010812 7.2e-31 138.3 72 91.7
A04p09340 Brassica napus HOM05D008814 ORTHO05D010812 7.2e-31 138.3 72 91.7
BolSC28t60310H Brassica oleracea HOM05D008814 ORTHO05D010812 7.2e-31 138.3 72 91.7
BolSC28t60366H Brassica oleracea HOM05D008814 ORTHO05D010812 7.2e-31 138.3 72 91.7
BraSC48t46234Z Brassica rapa HOM05D008814 ORTHO05D010812 7.2e-31 138.3 72 91.7
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 2.1e-30 136.7 72 90.3
Nitab4.5_0014940g0030 Nicotiana tabacum HOM05D008814 ORTHO05D010812 7.4e-28 128.3 79 83.5
Peaxi162Scf01120g00002 Petunia axillaris HOM05D008814 ORTHO05D010812 7.4e-28 128.3 85 81.2
ECA039G0011 Erigeron canadensis HOM05D005210 ORTHO05D010286 9.7e-28 127.9 101 67.3
Lsat_1_v5_gn_2_41741 Lactuca sativa HOM05D005210 ORTHO05D010286 9.7e-28 127.9 101 67.3
Lsat_1_v5_gn_6_2961 Lactuca sativa HOM05D005210 ORTHO05D010286 9.7e-28 127.9 101 67.3
Lsat_1_v5_gn_0_34981 Lactuca sativa HOM05D005210 ORTHO05D010286 2.8e-27 126.3 103 66.0
C01p34810 Brassica napus HOM05D008814 ORTHO05D010812 4.8e-27 125.6 71 84.5
C01p34890 Brassica napus HOM05D008814 ORTHO05D010812 6.3e-27 125.2 72 83.3
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 1.8e-26 123.6 89 73.0
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 4.1e-26 122.5 158 50.0
Lsat_1_v5_gn_5_16401 Lactuca sativa HOM05D005210 ORTHO05D010286 1.0e-24 117.9 101 62.4
Peaxi162Scf00489g00022 Petunia axillaris HOM05D005210 ORTHO05D011782 5.0e-24 115.5 80 82.5
SHI04841 Sapria himalayana HOM05D008814 ORTHO05D010812 7.2e-23 111.7 95 65.3
Nn2g10474 Nelumbo nucifera HOM05D008814 ORTHO05D010812 4.7e-22 109.0 62 87.1
Nn8g40503 Nelumbo nucifera HOM05D008814 ORTHO05D010812 2.3e-21 106.7 62 83.9
MELO3C027941.2 Cucumis melo HOM05D008814 ORTHO05D010812 1.1e-20 104.4 57 87.7
Nitab4.5_0000478g0040 Nicotiana tabacum HOM05D008814 ORTHO05D010812 2.0e-20 103.6 57 91.2
Lj2P1215T12 Lonicera japonica HOM05D008814 ORTHO05D010812 9.7e-20 101.3 59 81.4
Nn1g09507 Nelumbo nucifera HOM05D008814 ORTHO05D010812 2.2e-19 100.1 62 80.6
SHI29301 Sapria himalayana HOM05D008814 ORTHO05D010812 8.2e-19 98.2 57 80.7
Sopen11g014320 Solanum pennellii HOM05D005210 ORTHO05D010286 8.2e-19 98.2 121 50.4
Glyma.12G155200 Glycine max HOM05D005210 ORTHO05D010286 9.1e-18 94.7 83 61.4
TPR.G28261 Trifolium pratense HOM05D005210 ORTHO05D010286 1.6e-17 94.0 83 61.4
Sopen05g009620 Solanum pennellii HOM05D008814 ORTHO05D010812 2.0e-17 93.6 53 81.1
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 7.7e-17 91.7 49 83.7
Nitab4.5_0006085g0070 Nicotiana tabacum HOM05D008814 ORTHO05D010812 1.7e-16 90.5 62 82.3
Nitab4.5_0000172g1420 Nicotiana tabacum HOM05D008814 ORTHO05D010812 2.9e-16 89.7 70 70.0
ATR0987G010 Amborella trichopoda HOM05D008814 ORTHO05D010812 5.0e-16 89.0 64 78.1
MELO3C013036.2 Cucumis melo HOM05D008814 ORTHO05D010812 1.9e-15 87.0 53 77.4
TPR.G24723 Trifolium pratense HOM05D005210 ORTHO05D010286 4.7e-14 82.4 98 49.0
AUR62043906 Chenopodium quinoa HOM05D005210 ORTHO05D010286 1.8e-13 80.5 184 38.6
SalBow1G3053 Salvia bowleyana HOM05D005210 ORTHO05D010286 4.0e-13 79.3 184 37.0
BcaC02g09031 Brassica carinata HOM05D008814 ORTHO05D010812 1.3e-11 74.3 53 67.9
Nn1g10191 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.3e-11 74.3 56 66.1
Solyc08g036535.1 Solanum lycopersicum HOM05D018954 ORTHO05D010812 1.3e-11 74.3 36 94.4
BraSC48t46322Z Brassica rapa HOM05D005210 ORTHO05D010286 1.8e-10 70.5 34 94.1
LjContig00439g0018526 Lotus japonicus HOM05D005210 ORTHO05D010286 4.1e-10 69.3 104 48.1
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 7.7e-09 65.1 59 59.3
Hma1.2p1_0066F.1_g036150 Hydrangea macrophylla HOM05D005210 ORTHO05D010286 7.7e-09 65.1 59 59.3
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 7.7e-09 65.1 59 59.3
arahy.Tifrunner.gnm1.ann1.2DSY3L Arachis hypogaea HOM05D005210 ORTHO05D010286 2.2e-08 63.5 59 57.6
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 2.2e-08 63.5 59 57.6
Lj2P1229T95 Lonicera japonica HOM05D005210 ORTHO05D010286 2.2e-08 63.5 59 57.6
Solyc00g025290.1 Solanum lycopersicum HOM05D005210 ORTHO05D010286 2.2e-08 63.5 59 57.6
PGSC0003DMG400041193 Solanum tuberosum HOM05D005210 ORTHO05D010286 2.2e-08 63.5 59 57.6
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 3.8e-08 62.8 59 57.6
FAN17G0417 Fragaria x ananassa HOM05D005210 ORTHO05D010286 3.8e-08 62.8 50 60.0
EL10Ac6g14456 Beta vulgaris HOM05D005210 ORTHO05D010286 5.0e-08 62.4 59 55.9
AUR62042343 Chenopodium quinoa HOM05D005210 ORTHO05D010286 5.0e-08 62.4 59 55.9
Nitab4.5_0007225g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010286 8.5e-08 61.6 59 55.9
SabraMtG0001200 Salix brachista HOM05D005210 ORTHO05D010286 1.5e-07 60.8 143 37.1
CAN.G1.5 Capsicum annuum HOM05D005210 ORTHO05D010286 1.9e-07 60.5 59 54.2
Ah.10g028400 Amaranthus hybridus HOM05D005210 ORTHO05D010286 2.5e-07 60.1 59 54.2
Oeu002130.1 Olea europaea HOM05D005210 ORTHO05D010286 4.2e-07 59.3 106 37.7
ClCG09G013030 Citrullus lanatus HOM05D005210 ORTHO05D010286 5.5e-07 58.9 59 54.2
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 7.2e-07 58.5 183 32.2
COL.COLO4_04435 Corchorus olitorius HOM05D018954 ORTHO05D010812 9.4e-07 58.2 37 75.7
COL.COLO4_04461 Corchorus olitorius HOM05D018954 ORTHO05D010812 9.4e-07 58.2 37 75.7
COL.COLO4_04488 Corchorus olitorius HOM05D018954 ORTHO05D010812 9.4e-07 58.2 37 75.7
Manes.16G058078 Manihot esculenta HOM05D005210 ORTHO05D010286 9.4e-07 58.2 27 92.6
Nitab4.5_0000059g0490 Nicotiana tabacum HOM05D008814 ORTHO05D010812 9.4e-07 58.2 53 52.8
SHI11895 Sapria himalayana HOM05D005210 ORTHO05D010286 4.7e-06 55.8 88 44.3


User provided reference genes

Program Settings