Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.7e-154 548.1 266 100.0
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 3.9e-148 528.1 266 97.0
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.9e-147 525.8 266 96.6
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.3e-146 523.1 266 96.2
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.8e-146 521.9 266 96.2
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.8e-146 521.9 266 96.2
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.7e-146 521.5 266 96.2
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 9.1e-145 516.9 264 95.8
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.9
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 1.5e-144 516.2 266 94.7
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 1.5e-144 516.2 266 94.7
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 4.5e-144 514.6 264 95.5
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 2.2e-143 512.3 263 95.4
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 3.8e-143 511.5 266 95.1
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 6.5e-143 510.8 266 94.7
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 8.5e-143 510.4 266 94.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 8.5e-143 510.4 266 94.4
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 5.5e-142 507.7 266 94.0
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 7.2e-142 507.3 266 94.0
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 1.2e-141 506.5 266 94.0
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.7e-141 505.4 266 94.0
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 2.7e-141 505.4 266 94.0
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 6.1e-141 504.2 266 94.0
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.0e-139 499.2 266 93.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 6.3e-138 494.2 252 96.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 8.2e-138 493.8 252 96.0
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 1.1e-137 493.4 253 95.7
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.8e-137 492.7 252 96.0
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 9.1e-137 490.3 252 95.6
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 1.2e-136 490.0 252 96.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.5e-136 489.6 266 91.7
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 2.6e-136 488.8 266 91.7
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 3.2e-134 481.9 263 90.9
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 1.3e-130 469.9 265 89.4
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 2.8e-130 468.8 264 89.0
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 6.3e-130 467.6 243 95.1
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 6.3e-130 467.6 243 95.1
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 4.1e-129 464.9 239 95.8
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.6e-128 462.2 266 87.2
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.9e-127 458.8 265 87.2
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.8e-124 449.5 263 84.4
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 8.8e-124 447.2 262 84.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 2.4e-121 439.1 253 87.7
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 4.1e-121 438.3 240 91.2
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 1.2e-120 436.8 240 90.8
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 1.2e-112 410.2 261 80.5
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.6e-112 409.8 213 95.8
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 2.5e-110 402.5 211 94.8
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 2.5e-110 402.5 211 94.8
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 1.0e-108 397.1 209 93.3
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.0e-108 395.6 209 92.8
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 1.2e-107 393.7 252 80.6
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-106 389.8 257 79.0
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.8e-100 369.8 209 86.6
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.8e-99 364.0 202 91.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 4.1e-97 358.6 190 94.2
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.2e-97 357.5 206 88.3
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-86 322.8 184 88.0
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.2e-83 313.9 156 98.1
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 5.8e-83 311.6 161 95.0
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 9.5e-78 294.3 150 97.3
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 1.1e-73 280.8 218 67.9
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 2.7e-72 276.2 145 93.1
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 7.8e-72 274.6 148 90.5
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.0e-71 274.2 145 91.7
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 6.6e-71 271.6 160 86.9
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 6.6e-71 271.6 249 63.1
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 5.8e-67 258.5 148 89.2
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-66 256.9 195 72.3
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 3.3e-62 242.7 130 92.3
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 6.2e-61 238.4 279 46.2
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.2e-59 234.2 119 95.0
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 2.6e-59 233.0 122 93.4
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 4.2e-57 225.7 124 91.9
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.1e-57 224.9 160 75.0
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 7.4e-54 214.9 103 100.0
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 8.1e-53 211.5 108 94.4
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-49 200.7 116 85.3
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 5.5e-49 198.7 113 91.2
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 2.3e-47 193.4 105 91.4
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 3.9e-47 192.6 106 92.5
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 9.6e-46 188.0 101 87.1
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 9.0e-44 181.4 152 64.5
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 3.5e-40 169.5 85 94.1
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-39 166.4 210 46.7
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 5.1e-39 165.6 81 96.3
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.8e-37 159.8 184 52.2
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.2e-33 146.4 108 71.3
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 9.3e-33 144.8 88 81.8
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-32 144.1 82 85.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 3.6e-32 142.9 258 32.6
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-32 141.7 149 55.7
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-31 141.0 78 87.2
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 2.3e-31 140.2 82 87.8
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 6.7e-31 138.7 101 71.3
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.2e-27 127.9 154 48.7
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 5.9e-27 125.6 63 92.1
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 2.7e-24 116.7 58 96.6
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.1e-24 115.5 75 80.0
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 3.3e-22 109.8 57 91.2
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 7.4e-22 108.6 172 43.0
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 6.3e-21 105.5 68 75.0
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-19 101.3 64 78.1
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.9e-18 96.7 67 73.1
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 1.1e-17 94.7 48 89.6
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 1.9e-17 94.0 65 73.8
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-15 86.7 40 92.5
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 6.7e-15 85.5 119 44.5
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-14 83.6 56 78.6
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 4.4e-14 82.8 49 73.5
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-13 81.3 61 62.3
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-13 79.7 51 84.3
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 8.2e-13 78.6 41 82.9
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 9.1e-12 75.1 53 81.1
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 5.9e-11 72.4 84 48.8
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 6.5e-10 68.9 59 67.8
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 3.2e-09 66.6 29 100.0
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.2e-09 65.5 31 90.3
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 9.4e-09 65.1 118 34.7
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 6.1e-08 62.4 30 86.7
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 1.8e-07 60.8 31 87.1
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-06 58.2 74 44.6
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.5e-06 57.8 32 81.2
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.4e-06 56.2 31 80.6


User provided reference genes

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