Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1180.2 578 100.0
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1175.6 579 99.8
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 0.0e+00 1162.5 580 98.4
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1131.3 556 99.5
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 0.0e+00 1105.5 580 94.5
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 0.0e+00 1093.2 579 93.6
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 0.0e+00 1091.6 580 92.9
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 0.0e+00 1091.6 580 92.9
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1087.8 545 97.6
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 0.0e+00 1085.5 577 93.4
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 0.0e+00 1085.5 577 93.4
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 5.1e-310 1067.0 576 92.0
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 5.6e-309 1063.5 578 91.5
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.6e-309 1062.8 578 91.9
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-304 1047.7 573 91.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-304 1047.7 573 91.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-304 1047.7 573 91.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-304 1047.7 573 91.1
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 9.3e-304 1046.2 575 91.5
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.9e-303 1043.1 565 91.7
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 6.7e-302 1040.0 578 90.8
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.9e-301 1038.5 572 90.9
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.4e-298 1027.7 576 89.6
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.0e-297 1026.2 580 89.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.7e-297 1025.4 576 89.2
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-296 1021.9 568 90.3
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-296 1021.9 568 90.3
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 9.0e-291 1003.0 581 88.8
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 9.0e-291 1003.0 581 88.8
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 9.0e-291 1003.0 581 88.8
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 9.0e-291 1003.0 581 88.8
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 9.0e-291 1003.0 581 88.8
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 9.0e-291 1003.0 581 88.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 5.0e-289 997.3 564 87.9
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 6.5e-281 970.3 507 94.9
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.4e-280 969.1 550 88.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 2.1e-279 965.3 574 84.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-273 946.0 572 83.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.7e-273 945.7 579 83.9
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.1e-259 898.3 577 81.3
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-259 897.9 573 80.1
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-256 889.8 553 82.1
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.9e-244 847.8 476 89.5
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 9.2e-227 790.4 491 83.5
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 6.6e-217 757.7 396 95.5
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 2.7e-210 735.7 396 93.7
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.4e-200 701.0 472 79.2
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.2e-197 693.7 459 77.1
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 7.1e-195 684.5 373 90.9
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 7.1e-195 684.5 373 90.9
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.7e-194 682.6 400 86.0
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.8e-193 679.9 373 90.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.9e-193 678.7 373 90.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.9e-192 676.4 373 90.1
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 4.9e-188 661.8 576 63.0
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.9e-182 641.3 360 89.7
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.9e-179 633.3 578 62.1
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-174 617.5 390 82.3
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.4e-174 617.1 318 95.6
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-173 612.8 399 79.7
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 7.9e-170 601.3 361 85.6
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.3e-169 599.7 372 83.3
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.6e-168 596.3 318 93.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 4.2e-155 552.4 578 55.5
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.1e-154 550.1 293 94.2
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 8.8e-153 544.7 578 55.0
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 7.5e-144 515.0 306 85.3
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 7.2e-139 498.4 293 85.7
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 5.7e-136 488.8 260 93.8
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 4.1e-134 482.6 373 70.2
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 4.3e-131 472.6 271 87.1
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.1e-130 470.3 296 81.8
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.0e-129 466.1 285 83.5
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.5e-128 461.8 305 77.0
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-121 441.4 277 81.6
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-120 438.0 243 89.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.6e-120 436.8 396 62.1
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 6.0e-117 425.6 265 81.1
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 8.6e-116 421.8 239 90.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 4.0e-113 412.9 218 93.6
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 8.9e-113 411.8 292 75.0
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 8.9e-113 411.8 292 75.0
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.5e-109 399.8 208 93.3
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 7.3e-107 392.1 204 93.6
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 7.3e-107 392.1 204 93.6
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.1e-106 390.6 860 37.6
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.8e-106 390.2 204 93.1
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 4.7e-106 389.4 235 80.4
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 8.1e-106 388.7 273 72.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 9.9e-104 381.7 197 94.4
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 8.4e-103 378.6 197 93.9
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 6.0e-93 345.9 287 66.6
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.3e-92 344.0 198 89.4
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.5e-91 340.5 191 92.7
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 334.3 192 83.9
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 334.3 192 83.9
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 2.6e-88 330.5 172 92.4
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-88 330.5 181 93.9
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.8e-87 326.6 264 66.7
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 2.4e-86 323.9 176 89.2
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 7.1e-86 322.4 175 89.1
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.0e-84 318.5 263 66.2
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 3.3e-83 313.5 264 64.4
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 4.3e-83 313.2 176 86.9
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.6e-80 302.4 171 91.2
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.9e-79 300.4 238 66.8
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.9e-77 292.4 160 91.2
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.0e-76 290.4 220 72.7
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 5.1e-76 289.7 163 87.7
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-74 283.5 144 92.4
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.2e-74 282.7 227 69.2
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 4.2e-70 270.0 348 46.8
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-69 268.5 172 78.5
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-69 268.5 172 78.5
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 2.7e-69 267.3 136 97.1
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.7e-66 256.9 180 74.4
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-65 253.4 134 94.0
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.0e-63 248.8 136 93.4
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-62 245.4 272 55.1
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-59 235.3 143 76.9
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 2.5e-59 234.2 120 88.3
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.7e-58 230.3 124 95.2
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.8e-57 228.0 122 94.3
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 2.6e-56 224.2 148 74.3
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 5.5e-54 216.5 118 83.9
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 9.7e-51 205.7 112 89.3
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-50 204.9 123 86.2
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 3.7e-50 203.8 116 90.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.1e-49 200.7 125 82.4
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 5.3e-49 199.9 122 84.4
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 2.0e-48 198.0 108 94.4
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 7.7e-48 196.1 129 78.3
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.9e-47 194.1 123 81.3
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.1e-46 192.2 117 87.2
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 5.5e-46 189.9 104 93.3
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-43 181.0 331 40.8
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 9.1e-41 172.6 110 76.4
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-40 171.8 165 61.8
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-40 171.0 115 78.3
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-35 153.7 94 86.2
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-34 152.1 91 85.7
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.3e-34 152.1 75 98.7
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 4.2e-30 137.1 137 57.7
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 4.2e-30 137.1 76 85.5
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 6.1e-29 133.3 65 96.9
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.8e-28 129.8 248 37.9
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.4e-27 127.5 93 74.2
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 5.4e-25 120.2 66 89.4
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 2.5e-22 111.3 70 72.9
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.2e-22 110.5 62 87.1
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 2.8e-21 107.8 197 37.6
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.9e-20 102.8 168 41.1
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-19 102.1 69 76.8
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.8e-19 99.4 64 70.3
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.3e-18 99.0 64 73.4
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 2.2e-18 98.2 49 93.9
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 8.3e-18 96.3 97 55.7
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 3.1e-17 94.4 51 74.5
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.6e-16 92.0 51 84.3
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.3e-15 89.0 60 76.7
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.3e-15 88.2 53 90.6
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.3e-15 88.2 145 40.0
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.8e-15 87.4 115 47.0
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 3.3e-14 84.3 83 54.2
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 9.5e-14 82.8 60 73.3
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 1.8e-12 78.6 50 78.0
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.8e-12 78.6 99 50.5
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-11 75.5 198 31.8
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 2.6e-11 74.7 45 84.4
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-11 74.7 67 59.7
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 5.8e-11 73.6 50 64.0
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 5.8e-11 73.6 63 60.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 2.2e-10 71.6 47 72.3
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-09 68.2 45 77.8
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 5.4e-09 67.0 29 96.6
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.4e-09 67.0 54 68.5
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.0e-09 66.6 49 67.3
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 9.2e-09 66.2 34 85.3
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.6e-08 65.5 53 64.2
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.5e-06 56.2 44 63.6
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 9.5e-06 56.2 28 92.9


User provided reference genes

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