Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.4e-194 681.0 325 100.0
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.4e-194 681.0 325 100.0
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.0e-46 189.5 171 55.0
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.0e-37 160.6 225 43.6
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.0e-37 160.6 225 43.6
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 4.5e-37 159.5 170 49.4
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.3e-36 157.9 137 60.6
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 1.4e-35 154.5 172 47.1
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-35 153.7 170 49.4
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-35 153.7 170 49.4
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.5e-35 153.7 170 49.4
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 9.3e-35 151.8 170 48.8
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 9.3e-35 151.8 183 49.2
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.6e-34 149.8 170 48.2
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.7e-33 145.2 128 56.2
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 3.3e-32 143.3 360 33.1
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.3e-32 142.9 158 49.4
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.4e-30 137.9 171 45.0
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.4e-30 137.1 152 46.7
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 2.4e-30 137.1 175 45.1
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 5.3e-30 136.0 170 44.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 6.9e-30 135.6 168 45.2
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 6.9e-30 135.6 168 45.2
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 7.7e-29 132.1 174 44.3
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 5.0e-28 129.4 167 48.5
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.0e-28 129.4 174 43.7
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.0e-28 129.4 174 43.7
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.0e-28 129.4 174 43.7
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.0e-28 129.4 174 43.7
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 5.0e-28 129.4 174 43.7
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.0e-28 129.4 174 43.7
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 3.2e-27 126.7 152 45.4
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 4.2e-27 126.3 148 50.0
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 4.6e-26 122.9 153 47.1
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 4.6e-26 122.9 153 47.1
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 1.0e-25 121.7 167 43.7
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-25 120.6 165 44.2
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 3.9e-25 119.8 178 42.1
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 3.9e-25 119.8 148 48.0
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.6e-24 117.1 165 43.6
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 2.6e-24 117.1 154 44.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 4.4e-24 116.3 174 42.5
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 4.4e-24 116.3 174 42.5
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 4.4e-24 116.3 174 42.5
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 4.4e-24 116.3 174 42.5
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.7e-23 114.4 149 41.6
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 2.2e-23 114.0 141 47.5
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 6.3e-23 112.5 159 44.0
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.1e-22 110.2 159 43.4
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.1e-22 110.2 159 43.4
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 4.1e-22 109.8 165 40.6
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 6.9e-22 109.0 165 43.0
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 6.9e-22 109.0 161 37.3
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.9e-22 109.0 156 42.9
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 4.5e-21 106.3 147 44.9
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.9e-21 105.9 165 41.8
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 5.9e-21 105.9 165 41.2
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 7.7e-21 105.5 114 46.5
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-20 105.1 156 40.4
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.0e-20 105.1 150 42.0
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 2.9e-20 103.6 161 42.9
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 2.7e-18 97.1 121 45.5
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 3.6e-18 96.7 197 37.1
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.7e-18 96.3 160 39.4
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 7.9e-18 95.5 122 45.9
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 7.9e-18 95.5 131 43.5
MBI05_g43410_MAGBIO Magnolia biondii HOM05D021484 ORTHO05D022418 7.9e-18 95.5 114 46.5
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.5e-16 91.3 116 45.7
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 2.6e-16 90.5 110 48.2
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 9.7e-16 88.6 144 39.6
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.7e-15 87.8 80 50.0
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 1.7e-15 87.8 75 62.7
TAR623G1007 Trochodendron aralioides HOM05D002660 ORTHO05D003902 2.8e-15 87.0 73 63.0
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 4.8e-15 86.3 123 41.5
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.1e-14 85.1 73 53.4
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 3.1e-14 83.6 80 53.8
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 7.0e-14 82.4 156 35.3
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 7.0e-14 82.4 66 53.0
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 7.0e-14 82.4 109 45.0
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 9.1e-14 82.0 102 44.1
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.2e-13 81.6 117 43.6
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.6e-13 80.5 77 48.1
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 5.9e-13 79.3 119 40.3
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.9e-13 79.3 73 52.1
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-12 78.6 80 48.8
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-12 78.6 102 44.1
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 2.2e-12 77.4 120 41.7
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 2.9e-12 77.0 77 49.4
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 5.0e-12 76.3 172 36.6
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 5.0e-12 76.3 172 36.6
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 5.0e-12 76.3 78 48.7
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 6.5e-12 75.9 173 36.4
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 6.5e-12 75.9 60 55.0
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.5e-12 75.9 80 47.5
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 6.5e-12 75.9 80 47.5
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 8.5e-12 75.5 76 46.1
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 8.5e-12 75.5 159 37.1
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 1.1e-11 75.1 51 64.7
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 1.1e-11 75.1 51 64.7
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 1.5e-11 74.7 108 44.4
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 1.9e-11 74.3 109 39.4
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.5e-11 73.9 77 49.4
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 4.2e-11 73.2 80 45.0
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.5e-11 72.8 51 62.7
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.5e-11 72.8 51 62.7
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.5e-11 72.8 51 62.7
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.6e-10 71.2 51 60.8
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 3.6e-10 70.1 117 37.6
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-10 69.7 73 41.1
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-09 68.6 80 43.8
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 1.0e-09 68.6 62 50.0
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 1.0e-09 68.6 151 32.5
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 1.0e-09 68.6 151 32.5
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 2.3e-09 67.4 47 68.1
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 3.0e-09 67.0 51 60.8
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 5.2e-09 66.2 46 67.4
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 6.7e-09 65.9 67 52.2
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 6.7e-09 65.9 67 52.2
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 6.7e-09 65.9 67 52.2
arahy.Tifrunner.gnm1.ann1.PK4DTL Arachis hypogaea HOM05D012916 ORTHO05D014365 6.7e-09 65.9 40 67.5
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 6.7e-09 65.9 67 52.2
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 6.7e-09 65.9 66 50.0
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 8.8e-09 65.5 78 50.0
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 8.8e-09 65.5 155 31.6
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 8.8e-09 65.5 81 46.9
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.2e-08 65.1 138 31.9
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 1.5e-08 64.7 49 63.3
Lj2P1228T81 Lonicera japonica HOM05D011380 ORTHO05D019448 2.0e-08 64.3 59 49.2
arahy.Tifrunner.gnm1.ann1.QE2SNE Arachis hypogaea HOM05D002660 ORTHO05D013121 2.6e-08 63.9 46 63.0
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 2.6e-08 63.9 121 37.2
Glyma.17G185300 Glycine max HOM05D002660 ORTHO05D003902 5.7e-08 62.8 89 37.1
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.5e-08 62.4 64 43.8
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 7.5e-08 62.4 51 56.9
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.3e-07 61.6 78 42.3
Cfa021368 Carpinus fangiana HOM05D014842 ORTHO05D010514 1.7e-07 61.2 81 42.0
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.7e-07 61.2 125 38.4
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 2.8e-07 60.5 67 49.3
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 3.7e-07 60.1 78 37.2
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.8e-07 59.7 69 43.5
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 4.8e-07 59.7 51 54.9
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 4.8e-07 59.7 43 65.1
unitig_87.g28008 Utricularia gibba HOM05D002660 ORTHO05D003902 8.2e-07 58.9 90 41.1
HPP92_006569 Vanilla planifolia HOM05D002660 ORTHO05D003902 8.2e-07 58.9 50 52.0
Rhsim06G0107900 Rhododendron simsii HOM05D002660 ORTHO05D003902 1.1e-06 58.5 55 50.9
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 1.1e-06 58.5 55 47.3
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 1.8e-06 57.8 47 57.4
Dinv06708 Davidia involucrata HOM05D002660 ORTHO05D003902 2.4e-06 57.4 126 33.3
SGA_v2.0_scaffold477G52176 Striga asiatica HOM05D039527 ORTHO05D030779 2.4e-06 57.4 101 36.6
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.3e-06 56.2 54 53.7
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 5.3e-06 56.2 53 50.9
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 9.1e-06 55.5 42 57.1
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 9.1e-06 55.5 53 56.6


User provided reference genes

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