Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 6.8e-159 563.9 282 100.0
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 2.9e-149 531.9 282 94.7
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 4.3e-145 518.1 271 95.9
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 4.3e-145 518.1 280 92.1
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 6.2e-144 514.2 282 91.8
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 3.4e-142 508.4 286 91.6
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 2.2e-141 505.8 281 90.7
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.9e-141 505.4 285 90.9
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.9e-141 505.4 282 90.8
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 9.3e-140 500.4 278 92.4
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 1.6e-139 499.6 282 89.4
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 7.9e-139 497.3 286 89.9
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.3e-138 495.7 279 90.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 3.9e-138 495.0 271 92.3
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 5.1e-138 494.6 284 89.8
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 6.7e-138 494.2 282 89.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.7e-138 494.2 271 91.9
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.5e-137 493.0 282 90.1
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.3e-136 490.0 280 89.6
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 2.1e-136 489.2 280 88.9
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 9.0e-135 483.8 272 90.1
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.5e-134 483.0 281 87.2
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.6e-134 482.3 280 87.5
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 4.2e-132 474.9 286 86.4
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 4.2e-132 474.9 286 86.4
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 6.0e-131 471.1 271 87.8
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.3e-130 469.9 283 86.6
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 1.8e-130 469.5 267 91.0
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 1.8e-130 469.5 267 91.0
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 1.8e-130 469.5 267 91.0
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 6.7e-130 467.6 243 96.7
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 7.4e-129 464.2 267 89.9
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-127 459.9 278 86.0
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.4e-127 459.9 278 86.0
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 4.0e-127 458.4 282 85.8
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 1.2e-123 446.8 243 92.2
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.7e-123 445.7 271 84.9
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 4.6e-123 444.9 286 82.5
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.3e-121 438.7 263 85.2
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.3e-121 438.7 263 85.2
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.3e-121 438.7 263 85.2
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.3e-121 438.7 263 85.2
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.3e-121 438.7 263 85.2
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.3e-121 438.7 263 85.2
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 5.7e-121 438.0 228 96.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 7.4e-121 437.6 248 90.7
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 2.2e-120 436.0 247 91.9
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 3.7e-120 435.3 278 82.4
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.4e-119 432.6 247 90.7
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 2.2e-117 426.0 244 90.6
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 3.2e-116 422.2 252 85.3
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.2e-116 421.0 247 88.7
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 7.2e-116 421.0 247 88.7
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 3.6e-115 418.7 247 88.3
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.6e-115 418.7 247 88.3
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.6e-115 418.7 247 88.3
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 3.6e-115 418.7 270 80.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.0e-114 417.2 243 89.7
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 5.7e-113 411.4 242 86.4
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 4.5e-110 401.7 232 89.7
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-109 399.8 280 76.1
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.4e-105 384.4 278 74.5
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 4.8e-104 381.7 229 87.3
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 4.2e-100 368.6 286 72.4
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.2e-99 367.1 264 75.8
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.5e-93 344.7 271 69.0
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 7.5e-89 331.3 235 77.4
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.0e-85 318.5 178 90.4
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 5.2e-82 308.5 166 95.2
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.5e-81 304.7 282 61.3
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.1e-75 286.6 243 66.7
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 2.1e-75 286.6 243 66.7
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 9.8e-73 277.7 157 91.1
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 9.8e-73 277.7 173 85.0
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.6e-67 260.4 218 67.4
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 8.0e-67 258.1 154 87.7
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.4e-66 257.3 196 72.4
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 1.9e-63 246.9 151 86.1
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 2.4e-63 246.5 189 72.5
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 3.5e-62 242.7 146 86.3
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.1e-60 237.7 206 67.5
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.6e-59 233.8 123 91.1
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 8.1e-59 231.5 254 53.9
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.7e-54 216.5 122 83.6
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 3.5e-54 216.1 159 76.1
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 2.8e-51 206.5 110 94.5
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 8.9e-50 201.4 111 86.5
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.3e-48 197.6 112 85.7
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 3.7e-48 196.1 152 71.1
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.2e-42 175.6 158 65.2
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-39 167.9 150 60.7
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 1.2e-38 164.5 94 88.3
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.1e-37 159.1 92 88.0
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 8.7e-37 158.3 92 85.9
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 2.5e-36 156.8 87 88.5
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 4.3e-36 156.0 92 85.9
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 6.9e-34 148.7 83 90.4
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 1.2e-30 137.9 83 84.3
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.1e-29 132.5 70 88.6
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.3e-24 117.9 63 92.1
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 1.3e-24 117.9 63 92.1
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 1.3e-24 117.9 63 92.1
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 1.4e-23 114.4 75 72.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.2e-23 112.8 59 88.1
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-19 99.4 74 66.2
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.4e-18 97.1 46 100.0
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 4.0e-18 96.3 52 90.4
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 4.0e-18 96.3 79 64.6
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-17 94.7 81 61.7
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 7.1e-15 85.5 52 80.8
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 1.6e-14 84.3 46 84.8
SHI32117 Sapria himalayana HOM05D003430 ORTHO05D004809 6.0e-14 82.4 67 64.2
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 7.9e-14 82.0 141 40.4
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 2.3e-13 80.5 53 67.9
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 8.7e-13 78.6 81 58.0
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 7.4e-12 75.5 69 68.1
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 3.1e-10 70.1 167 34.7
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 1.7e-08 64.3 37 83.8
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 5.0e-08 62.8 32 87.5
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 5.0e-08 62.8 32 87.5
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 5.0e-08 62.8 32 87.5
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 5.0e-08 62.8 42 73.8
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 2.1e-06 57.4 46 71.7


User provided reference genes

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