Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g10073 Nelumbo nucifera HOM05D008283 ORTHO05D009928 5.2e-41 170.6 87 100.0
ATR0273G001 Amborella trichopoda HOM05D017454 ORTHO05D009928 1.4e-25 119.4 83 73.5
COL.COLO4_35489 Corchorus olitorius HOM05D008283 ORTHO05D009928 2.3e-25 118.6 75 77.3
Solyc00g210860.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.4e-17 92.8 81 58.0
Solyc08g036550.1 Solanum lycopersicum HOM05D010940 ORTHO05D009928 1.4e-17 92.8 81 58.0
Nitab4.5_0010736g0020 Nicotiana tabacum HOM05D017454 ORTHO05D009928 1.0e-12 76.6 81 50.6
Peaxi162Scf01132g00318 Petunia axillaris HOM05D017454 ORTHO05D009928 1.3e-12 76.3 75 53.3
ATR0752G114 Amborella trichopoda HOM05D017454 ORTHO05D009928 2.3e-12 75.5 44 86.4
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 2.3e-12 75.5 83 43.4
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 7.3e-11 70.5 83 43.4
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 1.3e-10 69.7 83 43.4
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 1.3e-10 69.7 83 43.4
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 1.3e-10 69.7 83 43.4
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 1.3e-10 69.7 83 43.4
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 1.1e-09 66.6 83 41.0
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 3.1e-09 65.1 83 41.0
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 3.1e-09 65.1 83 41.0
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 3.1e-09 65.1 83 41.0
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 3.1e-09 65.1 83 41.0
Lsat_1_v5_gn_0_38260 Lactuca sativa HOM05D010940 ORTHO05D009928 3.1e-09 65.1 83 42.2
Lsat_1_v5_gn_6_64680 Lactuca sativa HOM05D010940 ORTHO05D009928 3.1e-09 65.1 83 42.2
Lsat_1_v5_gn_8_11761 Lactuca sativa HOM05D010940 ORTHO05D009928 3.1e-09 65.1 83 42.2
Rhsim10G0009400 Rhododendron simsii HOM05D000071 ORTHO05D000029 4.0e-09 64.7 49 69.4
DCAR_022727 Daucus carota HOM05D010940 ORTHO05D009928 6.9e-09 63.9 83 39.8
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 9.0e-09 63.5 78 38.5
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 9.0e-09 63.5 78 38.5
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 1.2e-08 63.2 83 38.6
Lsat_1_v5_gn_7_67861 Lactuca sativa HOM05D010940 ORTHO05D009928 1.2e-08 63.2 83 41.0
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 3.4e-08 61.6 76 40.8
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 4.4e-08 61.2 82 37.8
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.7e-07 59.3 83 41.0
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 3.8e-07 58.2 76 38.2
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 3.8e-07 58.2 76 39.5
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 4.9e-07 57.8 84 38.1
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 4.9e-07 57.8 84 38.1
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 4.9e-07 57.8 84 38.1
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 4.9e-07 57.8 74 40.5
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 4.9e-07 57.8 74 40.5
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 4.9e-07 57.8 75 44.0
RcHm_v2.0_MTg0499231 Rosa chinensis HOM05D010940 ORTHO05D020245 6.4e-07 57.4 81 35.8
Sopen00g002760 Solanum pennellii HOM05D010940 ORTHO05D009928 1.1e-06 56.6 76 38.2
ECA039G0024 Erigeron canadensis HOM05D008490 ORTHO05D010725 1.4e-06 56.2 73 39.7
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.4e-06 56.2 83 36.1
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 4.2e-06 54.7 68 41.2
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 5.4e-06 54.3 84 38.1
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 5.4e-06 54.3 83 37.3
CSS0025600 Camellia sinensis var. sinensis HOM05D010940 ORTHO05D020245 9.3e-06 53.5 65 40.0
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 9.3e-06 53.5 88 37.5
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 9.3e-06 53.5 88 37.5


User provided reference genes

Program Settings