Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.2e-104 383.3 199 100.0
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.2e-104 383.3 199 100.0
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.6e-98 361.7 197 95.4
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.1e-97 360.1 197 94.9
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 2.2e-95 352.4 199 93.0
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 2.9e-95 352.1 190 96.3
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 2.9e-95 352.1 190 96.3
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 2.9e-95 352.1 190 96.3
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 8.4e-95 350.5 189 96.8
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.4e-94 349.7 190 96.3
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.2e-93 346.7 196 92.9
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 7.9e-93 344.0 199 91.0
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 1.0e-92 343.6 199 92.5
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.7e-92 342.8 182 96.7
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 6.6e-92 340.9 199 91.0
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.5e-91 339.7 195 92.3
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 2.1e-90 335.9 189 94.7
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 2.1e-90 335.9 189 94.7
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 2.1e-90 335.9 189 94.7
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.8e-89 332.8 189 94.2
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 2.4e-89 332.4 195 90.8
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 7.6e-88 327.4 195 88.7
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 7.6e-88 327.4 195 88.7
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-86 323.6 199 87.4
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-86 323.6 199 87.4
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 2.4e-86 322.4 195 87.2
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 2.1e-85 319.3 180 93.3
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 4.6e-85 318.2 199 85.9
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 1.9e-83 312.8 188 87.8
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 1.9e-83 312.8 188 87.8
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 9.6e-83 310.5 199 85.9
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 9.6e-83 310.5 199 85.9
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 2.1e-82 309.3 166 95.8
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.8e-81 306.2 165 95.8
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 7.6e-80 300.8 199 83.9
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 7.6e-80 300.8 199 83.9
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 2.2e-79 299.3 188 84.6
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 4.9e-79 298.1 190 84.2
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 6.5e-79 297.7 199 81.4
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 6.5e-79 297.7 190 84.2
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.6e-77 293.1 190 83.2
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 2.7e-77 292.4 189 83.1
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 3.5e-77 292.0 203 77.8
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 3.5e-77 292.0 179 83.8
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 1.3e-76 290.0 174 87.4
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.3e-75 285.4 156 93.6
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 4.8e-74 281.6 152 96.7
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-73 280.4 171 86.5
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 6.5e-71 271.2 159 89.9
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 9.3e-70 267.3 148 91.9
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.2e-69 266.9 155 91.0
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.1e-67 260.4 149 91.9
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.1e-67 260.4 149 91.9
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 9.7e-67 257.3 155 87.1
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 4.1e-65 251.9 145 91.7
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 1.1e-62 243.8 150 85.3
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 2.1e-61 239.6 131 94.7
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 2.7e-61 239.2 148 83.1
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.9e-61 237.7 150 82.7
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 3.0e-60 235.7 150 84.7
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 1.1e-57 227.3 133 88.7
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 6.9e-57 224.6 185 69.2
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 6.9e-57 224.6 185 69.2
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 6.9e-57 224.6 185 69.2
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 7.7e-56 221.1 170 72.9
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 2.2e-55 219.5 120 94.2
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 3.8e-55 218.8 185 67.0
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.9e-54 216.5 143 79.0
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 3.6e-53 212.2 185 65.9
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-52 210.3 187 66.3
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 3.9e-52 208.8 170 68.8
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 3.9e-52 208.8 170 68.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.4e-51 205.3 160 71.9
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.4e-51 204.5 133 81.2
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.1e-49 200.7 160 71.2
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 5.3e-49 198.4 119 85.7
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 7.2e-46 188.0 101 92.1
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 6.3e-42 174.9 115 83.5
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 1.1e-38 164.1 98 84.7
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 7.2e-38 161.4 97 90.7
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 1.6e-37 160.2 99 85.9
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 2.0e-35 153.3 89 88.8
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 8.3e-34 147.9 80 95.0
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 7.0e-33 144.8 86 88.4
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 9.1e-33 144.4 86 89.5
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.0e-32 143.3 88 88.6
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 2.3e-28 129.8 75 92.0
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 5.2e-28 128.6 72 90.3
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-26 124.0 75 84.0
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 4.9e-26 122.1 163 49.1
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 1.1e-25 120.9 64 92.2
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-23 114.0 78 75.6
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 3.8e-23 112.5 74 79.7
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 3.8e-23 112.5 74 79.7
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.2e-21 107.5 70 81.4
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 2.1e-21 106.7 64 87.5
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 8.0e-21 104.8 78 76.9
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.0e-20 104.4 82 68.3
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 1.0e-20 104.4 89 61.8
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.5e-19 100.5 68 83.8
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 8.3e-18 94.7 52 88.5
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.1e-12 76.3 82 56.1
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.4e-11 72.4 60 65.0
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-10 70.9 36 94.4
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 4.9e-10 68.9 43 88.4
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 2.4e-09 66.6 41 78.0
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 1.2e-08 64.3 54 70.4
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 3.5e-08 62.8 39 76.9
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 1.9e-06 57.0 38 81.6


User provided reference genes

Program Settings