Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g10039 Nelumbo nucifera HOM05D007924 ORTHO05D010328 7.4e-118 427.2 208 100.0
Nn1g10153 Nelumbo nucifera HOM05D007924 ORTHO05D010328 3.9e-111 404.8 197 100.0
Sed0020154 Sechium edule HOM05D007924 ORTHO05D010328 1.1e-94 350.1 193 90.7
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 3.6e-88 328.6 173 91.9
LjContig00315g0007302 Lotus japonicus HOM05D007924 ORTHO05D010328 2.3e-87 325.9 194 85.1
GSVIVG01000955001 Vitis vinifera HOM05D007924 ORTHO05D010328 6.7e-87 324.3 160 97.5
Lj2P1227T93 Lonicera japonica HOM05D007924 ORTHO05D010328 9.7e-86 320.5 160 96.9
PGR028G0018 Punica granatum HOM05D007924 ORTHO05D010328 3.1e-84 315.5 158 96.2
TPR.G7050 Trifolium pratense HOM05D007924 ORTHO05D010328 1.6e-83 313.2 171 89.5
CSS0018158 Camellia sinensis var. sinensis HOM05D007924 ORTHO05D010328 5.9e-83 311.2 160 94.4
HanXRQMTg0579161 Helianthus annuus HOM05D007924 ORTHO05D010328 5.9e-83 311.2 160 93.8
SHI38116 Sapria himalayana HOM05D007924 ORTHO05D010328 2.9e-82 308.9 197 81.7
Lalb_Chr00c24g0406701 Lupinus albus HOM05D007924 ORTHO05D010328 5.5e-81 304.7 171 87.7
RcHm_v2.0_Chr6g0257961 Rosa chinensis HOM05D007924 ORTHO05D010328 1.2e-80 303.5 160 91.9
RcHm_v2.0_MTg0498901 Rosa chinensis HOM05D007924 ORTHO05D010328 1.2e-80 303.5 160 91.9
DCAR_032428 Daucus carota HOM05D007924 ORTHO05D010328 2.1e-80 302.8 160 91.2
CANSAT16G0013 Cannabis sativa HOM05D007924 ORTHO05D010328 3.6e-80 302.0 160 91.2
PGSC0003DMG400011350 Solanum tuberosum HOM05D007924 ORTHO05D010328 2.3e-79 299.3 160 91.9
SGA_v2.0_scaffold575G53004 Striga asiatica HOM05D007924 ORTHO05D010328 3.0e-79 298.9 160 89.4
CAN.G1180.17 Capsicum annuum HOM05D007924 ORTHO05D010328 7.5e-78 294.3 160 90.6
Duzib116G0340 Durio zibethinus HOM05D007924 ORTHO05D010328 8.5e-74 280.8 157 87.9
Lj3g0001131 Lotus japonicus HOM05D007924 ORTHO05D010328 4.2e-73 278.5 158 86.1
Nitab4.5_0003945g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.4e-70 268.9 164 83.5
AT2G07707 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 1.8e-68 263.1 160 83.8
ATMG00480 Arabidopsis thaliana HOM05D007924 ORTHO05D010328 1.8e-68 263.1 160 83.8
CARHR282860 Cardamine hirsuta HOM05D007924 ORTHO05D010328 1.8e-68 263.1 160 83.8
BraSC48t46292Z Brassica rapa HOM05D007924 ORTHO05D010328 5.4e-68 261.5 160 83.1
BraSC48t46309Z Brassica rapa HOM05D007924 ORTHO05D010328 5.4e-68 261.5 160 83.1
Lalb_Chr14g0363841 Lupinus albus HOM05D007924 ORTHO05D010328 3.5e-67 258.8 171 77.2
Thhalv10029138m.g Eutrema salsugineum HOM05D007924 ORTHO05D010328 4.5e-67 258.5 160 82.5
CAN.G1001.34 Capsicum annuum HOM05D007924 ORTHO05D010328 3.3e-65 252.3 160 80.6
BolC1t03437H Brassica oleracea HOM05D007924 ORTHO05D010328 4.7e-64 248.4 160 80.0
Nitab4.5_0000172g0710 Nicotiana tabacum HOM05D007924 ORTHO05D010328 1.4e-60 236.9 157 77.1
Ca_03774_v3 Cicer arietinum L. HOM05D007924 ORTHO05D010328 1.3e-58 230.3 126 90.5
HanXRQMTg0579521 Helianthus annuus HOM05D007924 ORTHO05D010328 2.8e-56 222.6 142 79.6
Gorai.001G164500 Gossypium raimondii HOM05D007924 ORTHO05D010328 3.4e-54 215.7 122 84.4
Nitab4.5_0028251g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.5e-54 214.5 145 79.3
Oeu018666.1 Olea europaea HOM05D007924 ORTHO05D010328 2.3e-50 203.0 102 96.1
Nitab4.5_0000844g0160 Nicotiana tabacum HOM05D007924 ORTHO05D010328 6.6e-50 201.4 128 79.7
SabraMtG0001000 Salix brachista HOM05D007924 ORTHO05D010328 2.0e-46 189.9 119 80.7
RcHm_v2.0_MTg0499211 Rosa chinensis HOM05D007924 ORTHO05D010328 1.7e-45 186.8 101 87.1
CsaV3_5G016970 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.1e-44 184.1 114 79.8
HanXRQChr00c0055g0571411 Helianthus annuus HOM05D007924 ORTHO05D010328 6.2e-40 168.3 88 90.9
HanXRQChr09g0250631 Helianthus annuus HOM05D007924 ORTHO05D010328 2.9e-37 159.5 88 87.5
CsaV3_5G015830 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.1e-36 157.5 96 80.2
Cfa023001 Carpinus fangiana HOM05D007924 ORTHO05D010328 5.1e-34 148.7 71 95.8
Nitab4.5_0003222g0040 Nicotiana tabacum HOM05D007924 ORTHO05D010328 8.6e-34 147.9 113 69.0
HanXRQChr15g0468771 Helianthus annuus HOM05D007924 ORTHO05D010328 1.6e-32 143.7 79 86.1
CsaV3_UNG210380 Cucumis sativus L. HOM05D007924 ORTHO05D010328 1.8e-31 140.2 84 79.8
Phvul.011G125800 Phaseolus vulgaris HOM05D007924 ORTHO05D010328 1.8e-31 140.2 75 89.3
arahy.Tifrunner.gnm1.ann1.I8TN6N Arachis hypogaea HOM05D007924 ORTHO05D010328 1.5e-30 137.1 74 89.2
Nitab4.5_0004553g0090 Nicotiana tabacum HOM05D007924 ORTHO05D010328 7.6e-30 134.8 80 82.5
BolSC28t60326H Brassica oleracea HOM05D007924 ORTHO05D011743 9.9e-30 134.4 83 75.9
BraSC159t45717Z Brassica rapa HOM05D007924 ORTHO05D010328 9.9e-30 134.4 83 75.9
C01p34680 Brassica napus HOM05D007924 ORTHO05D010328 2.3e-26 123.2 83 71.1
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 2.6e-22 109.8 72 79.2
PGSC0003DMG400013141 Solanum tuberosum HOM05D007924 ORTHO05D010328 3.8e-21 105.9 60 86.7
CsaV3_3G039780 Cucumis sativus L. HOM05D000558 ORTHO05D006060 4.2e-20 102.4 64 81.2
BolSC28t60430H Brassica oleracea HOM05D007924 ORTHO05D010328 1.6e-19 100.5 52 88.5
BraSC48t46342Z Brassica rapa HOM05D007924 ORTHO05D010328 1.6e-19 100.5 71 69.0
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.3e-17 92.8 59 78.0
Nitab4.5_0002418g0260 Nicotiana tabacum HOM05D007924 ORTHO05D010328 9.6e-17 91.3 58 79.3
SHI38118 Sapria himalayana HOM05D007924 ORTHO05D010328 1.6e-16 90.5 49 85.7
MD02G1208400 Malus domestica HOM05D007924 ORTHO05D010328 1.5e-14 84.0 44 86.4
SHI34938 Sapria himalayana HOM05D007924 ORTHO05D010328 1.5e-14 84.0 74 63.5
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.3e-12 74.7 45 82.2
Potri.011G045912 Populus trichocarpa HOM05D007924 ORTHO05D010328 3.5e-11 72.8 59 64.4


User provided reference genes

Program Settings