Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.0e-81 306.6 147 100.0
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.4e-57 226.5 116 95.7
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 5.7e-16 88.2 118 45.8
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 7.0e-14 81.3 112 42.9
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 7.0e-14 81.3 112 42.9
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 7.0e-14 81.3 112 42.9
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 7.0e-14 81.3 112 42.9
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 7.0e-14 81.3 97 43.3
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 9.2e-14 80.9 112 42.9
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.7e-13 79.3 112 43.8
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.0e-12 77.4 120 42.5
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.0e-12 75.1 121 36.4
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.0e-12 75.1 121 36.4
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 6.6e-12 74.7 121 36.4
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 8.6e-12 74.3 122 36.1
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 8.6e-12 74.3 121 36.4
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.9e-11 73.2 129 34.1
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 2.5e-11 72.8 115 37.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 5.6e-11 71.6 121 36.4
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 5.6e-11 71.6 121 36.4
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 5.6e-11 71.6 114 36.0
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.6e-11 71.6 115 37.4
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.6e-11 71.6 115 37.4
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.6e-11 71.6 115 37.4
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.6e-11 71.6 115 37.4
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 5.6e-11 71.6 115 37.4
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.6e-11 71.6 115 37.4
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.6e-10 68.9 114 36.8
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.6e-10 68.9 112 41.1
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 3.6e-10 68.9 114 36.8
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 3.6e-10 68.9 114 36.8
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 3.6e-10 68.9 114 36.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 4.7e-10 68.6 114 36.8
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 4.7e-10 68.6 114 36.8
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.4e-09 67.0 116 37.1
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.8e-09 66.6 107 37.4
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 3.1e-09 65.9 114 34.2
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.0e-09 65.5 119 32.8
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-09 65.5 116 34.5
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 5.2e-09 65.1 108 38.0
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-08 63.9 120 34.2
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-08 63.5 120 34.2
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.5e-08 63.5 88 43.2
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 2.0e-08 63.2 120 34.2
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 2.6e-08 62.8 122 32.8
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 3.4e-08 62.4 85 36.5
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 3.4e-08 62.4 114 35.1
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 3.4e-08 62.4 101 36.6
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.8e-08 61.6 109 33.9
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.3e-07 60.5 89 39.3
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 2.2e-07 59.7 108 35.2
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.9e-07 59.3 113 34.5
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 3.7e-07 58.9 79 39.2
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 3.7e-07 58.9 116 33.6
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 4.9e-07 58.5 140 30.0
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.9e-06 56.6 103 35.9
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 2.4e-06 56.2 77 35.1
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-06 56.2 56 50.0
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 3.2e-06 55.8 117 29.1
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 4.1e-06 55.5 86 36.0
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 5.4e-06 55.1 104 33.7
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 9.2e-06 54.3 85 35.3


User provided reference genes

Program Settings