Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.1e-47 193.0 95 100.0
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.1e-47 193.0 95 100.0
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.1e-47 193.0 95 100.0
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 3.4e-46 188.0 95 96.8
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 3.4e-46 188.0 95 96.8
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 4.5e-46 187.6 94 96.8
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 2.9e-45 184.9 95 94.7
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 3.8e-45 184.5 95 95.8
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 7.2e-44 180.3 95 94.7
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.7e-43 178.3 94 93.6
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.4e-39 166.0 93 84.9
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 3.1e-39 164.9 87 94.3
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 9.7e-33 143.3 104 74.0
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 4.8e-32 141.0 92 75.0
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 3.1e-31 138.3 93 72.0
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.2e-30 136.3 92 72.8
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.6e-30 135.2 95 75.8
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 3.5e-30 134.8 98 72.4
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 5.9e-30 134.0 93 71.0
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 5.0e-29 131.0 95 69.5
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 6.5e-29 130.6 95 69.5
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 6.5e-29 130.6 92 70.7
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 8.5e-29 130.2 93 72.0
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 8.5e-29 130.2 66 90.9
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 1.5e-28 129.4 95 68.4
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 1.5e-28 129.4 92 70.7
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 2.5e-28 128.6 95 67.4
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 3.2e-28 128.3 93 69.9
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 3.2e-28 128.3 93 69.9
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 4.2e-28 127.9 93 68.8
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 5.5e-28 127.5 91 68.1
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 1.2e-27 126.3 93 67.7
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 1.6e-27 125.9 93 67.7
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 8.0e-27 123.6 93 64.5
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 2.3e-26 122.1 80 73.8
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 4.0e-26 121.3 87 67.8
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 4.0e-26 121.3 85 72.9
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 5.2e-26 120.9 87 67.8
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 5.2e-26 120.9 87 67.8
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 5.2e-26 120.9 87 67.8
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.5e-25 119.4 87 66.7
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 2.0e-25 119.0 88 64.8
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 4.4e-25 117.9 77 75.3
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 7.5e-25 117.1 74 77.0
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 7.5e-25 117.1 74 77.0
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 7.5e-25 117.1 74 77.0
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 9.7e-25 116.7 77 74.0
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 9.7e-25 116.7 77 74.0
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 9.7e-25 116.7 77 74.0
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 9.7e-25 116.7 94 63.8
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 2.2e-24 115.5 77 74.0
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.8e-24 115.2 74 75.7
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.8e-24 115.2 74 75.7
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 3.7e-24 114.8 88 65.9
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 3.7e-24 114.8 77 79.2
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 4.8e-24 114.4 96 63.5
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 4.8e-24 114.4 96 63.5
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 1.1e-23 113.2 88 63.6
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.1e-23 113.2 85 69.4
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 1.4e-23 112.8 75 72.0
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 1.4e-23 112.8 85 70.6
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 1.4e-23 112.8 72 73.6
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.8e-23 112.5 72 72.2
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.8e-23 112.5 72 72.2
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 2.4e-23 112.1 97 60.8
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 2.4e-23 112.1 72 72.2
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 3.1e-23 111.7 72 72.2
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 3.1e-23 111.7 72 72.2
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 3.1e-23 111.7 88 63.6
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 4.1e-23 111.3 90 64.4
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 4.1e-23 111.3 74 73.0
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 4.1e-23 111.3 66 84.8
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 5.3e-23 110.9 88 62.5
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.2e-22 109.8 85 68.2
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 1.2e-22 109.8 85 68.2
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 2.0e-22 109.0 77 71.4
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 5.9e-22 107.5 72 70.8
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.0e-21 106.7 65 78.5
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 1.3e-21 106.3 74 70.3
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.7e-21 105.9 85 65.9
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.5e-20 102.1 79 70.9
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 3.2e-20 101.7 85 63.5
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 3.2e-20 101.7 64 75.0
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 3.2e-20 101.7 62 75.8
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 4.2e-20 101.3 62 74.2
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 5.5e-20 100.9 63 76.2
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 7.2e-20 100.5 85 62.4
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 7.2e-20 100.5 63 74.6
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 7.2e-20 100.5 63 74.6
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 9.4e-20 100.1 62 74.2
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-19 99.8 63 73.0
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 1.6e-19 99.4 63 73.0
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 3.6e-19 98.2 63 74.6
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 4.7e-19 97.8 63 73.0
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 8.0e-19 97.1 53 84.9
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-18 96.3 63 71.4
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 2.3e-18 95.5 63 69.8
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 2.3e-18 95.5 63 69.8
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-17 93.2 63 69.8
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 1.5e-17 92.8 62 74.2
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-17 92.4 63 66.7
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 3.4e-17 91.7 63 71.4
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 3.4e-17 91.7 63 71.4
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 1.7e-16 89.4 51 80.4
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 4.8e-16 87.8 89 55.1
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.8e-15 85.9 59 69.5
ClCG03G011250 Citrullus lanatus HOM05D000540 ORTHO05D000001 2.4e-15 85.5 46 91.3
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 5.9e-14 80.9 74 56.8
SHI48062 Sapria himalayana HOM05D000540 ORTHO05D000681 7.7e-14 80.5 44 84.1
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.3e-13 79.7 74 55.4
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 2.3e-13 79.0 53 71.7
SHI34608 Sapria himalayana HOM05D000540 ORTHO05D000681 5.0e-13 77.8 42 88.1
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 6.5e-13 77.4 47 76.6
CAN.G993.9 Capsicum annuum HOM05D003467 ORTHO05D008105 1.1e-12 76.6 70 58.6
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 4.2e-12 74.7 96 43.8
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 9.5e-12 73.6 54 63.0
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 1.2e-11 73.2 76 52.6
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 1.6e-11 72.8 67 59.7
SHI38319 Sapria himalayana HOM05D000540 ORTHO05D000681 1.6e-11 72.8 38 86.8
Peaxi162Scf00406g00134 Petunia axillaris HOM05D001223 ORTHO05D001058 2.8e-11 72.0 34 94.1
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 2.8e-11 72.0 98 46.9
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 8.0e-11 70.5 61 60.7
MBI05_g05349_MAGBIO Magnolia biondii HOM05D016544 ORTHO05D017245 4.0e-10 68.2 43 79.1
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 5.2e-10 67.8 44 70.5
SHI37890 Sapria himalayana HOM05D000540 ORTHO05D008105 7.5e-09 63.9 53 62.3
SHI36893 Sapria himalayana HOM05D000540 ORTHO05D008105 9.8e-09 63.5 44 65.9
SHI40550 Sapria himalayana HOM05D000540 ORTHO05D008105 1.3e-08 63.2 45 64.4
Nitab4.5_0000351g0280 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.2e-08 62.4 45 71.1
SHI54100 Sapria himalayana HOM05D000540 ORTHO05D008105 4.9e-08 61.2 45 60.0
SHI37207 Sapria himalayana HOM05D000540 ORTHO05D008105 6.3e-08 60.8 65 50.8
SHI40537 Sapria himalayana HOM05D000540 ORTHO05D008105 8.3e-08 60.5 45 64.4
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 2.4e-07 58.9 58 56.9
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 2.0e-06 55.8 87 43.7
SHI47944 Sapria himalayana HOM05D000540 ORTHO05D008105 2.7e-06 55.5 45 57.8


User provided reference genes

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