Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09997 Nelumbo nucifera HOM05D005210 ORTHO05D010080 2.9e-95 352.1 203 100.0
Nn1g10098 Nelumbo nucifera HOM05D005210 ORTHO05D010080 2.9e-95 352.1 203 100.0
PGR069G0003 Punica granatum HOM05D005210 ORTHO05D010080 4.4e-83 311.6 208 89.9
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 3.3e-78 295.4 182 94.0
Phvul.005G088636 Phaseolus vulgaris HOM05D005210 ORTHO05D010080 6.8e-76 287.7 208 86.1
MBI04_g15069_MAGBIO Magnolia biondii HOM05D005210 ORTHO05D010080 4.4e-75 285.0 187 90.4
DCAR_032434 Daucus carota HOM05D005210 ORTHO05D010080 3.2e-73 278.9 196 84.2
Nitab4.5_0000299g0070 Nicotiana tabacum HOM05D005210 ORTHO05D010080 5.4e-73 278.1 200 78.0
Lj6g0026306 Lotus japonicus HOM05D005210 ORTHO05D010080 1.1e-70 270.4 206 68.9
Cpa.g.sc38.57 Carica papaya HOM05D005210 ORTHO05D010080 9.5e-70 267.3 182 88.5
Atru.chr1.3624 Acer truncatum HOM05D005210 ORTHO05D010080 2.8e-69 265.8 207 75.4
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 4.7e-69 265.0 162 95.1
Medtr6g012880 Medicago truncatula HOM05D005210 ORTHO05D010080 3.4e-67 258.8 205 66.8
arahy.Tifrunner.gnm1.ann1.00SNP9 Arachis hypogaea HOM05D005210 ORTHO05D010080 8.4e-66 254.2 181 85.1
arahy.Tifrunner.gnm1.ann1.883WGW Arachis hypogaea HOM05D005210 ORTHO05D010080 8.4e-66 254.2 181 85.1
TPR.G22447 Trifolium pratense HOM05D005210 ORTHO05D010080 7.1e-65 251.1 206 66.5
TPR.G32363 Trifolium pratense HOM05D005210 ORTHO05D010080 7.1e-65 251.1 206 66.0
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 1.7e-63 246.5 172 86.0
Nitab4.5_0006085g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010080 6.2e-61 238.0 199 70.9
Nitab4.5_0001761g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 6.8e-60 234.6 168 79.2
Ciclev10012798m.g Citrus clementina HOM05D005210 ORTHO05D010080 1.5e-59 233.4 206 66.5
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 4.4e-59 231.9 204 67.6
CANSAT78G1777 Cannabis sativa HOM05D005210 ORTHO05D010080 3.8e-58 228.8 201 65.2
Cfa023010 Carpinus fangiana HOM05D005210 ORTHO05D010080 1.1e-57 227.3 167 77.8
VMungo0329G0007 Vigna mungo HOM05D005210 ORTHO05D010080 1.1e-57 227.3 177 75.7
Oeu020894.1 Olea europaea HOM05D005210 ORTHO05D010080 1.4e-57 226.9 201 60.7
Lalb_Chr03g0038991 Lupinus albus HOM05D005210 ORTHO05D010080 3.2e-57 225.7 171 77.2
MELO3C028549.2 Cucumis melo HOM05D005210 ORTHO05D010080 1.2e-56 223.8 170 77.1
AUR62004733 Chenopodium quinoa HOM05D005210 ORTHO05D010080 3.5e-56 222.2 206 57.8
AUR62037526 Chenopodium quinoa HOM05D005210 ORTHO05D010080 1.0e-55 220.7 206 56.8
Lsat_1_v5_gn_7_109460 Lactuca sativa HOM05D005210 ORTHO05D010080 1.0e-55 220.7 205 57.1
Potri.007G062102 Populus trichocarpa HOM05D005210 ORTHO05D010080 1.1e-54 217.2 215 64.2
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 5.6e-54 214.9 209 64.6
Lalb_Chr02g0153671 Lupinus albus HOM05D005210 ORTHO05D010080 1.5e-51 206.8 186 68.8
CAN.G1109.4 Capsicum annuum HOM05D005210 ORTHO05D010080 7.6e-51 204.5 143 81.8
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.7e-50 203.4 165 74.5
CAN.G110.12 Capsicum annuum HOM05D005210 ORTHO05D010080 3.8e-50 202.2 143 81.1
Gohir.A10G200000 Gossypium hirsutum HOM05D005210 ORTHO05D010080 3.8e-50 202.2 211 54.5
Gohir.A10G199900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 8.4e-50 201.1 209 53.6
Gohir.D10G207900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 9.3e-49 197.6 211 54.0
Gorai.011G233600 Gossypium raimondii HOM05D005210 ORTHO05D010080 9.3e-49 197.6 211 54.0
Ah.03g133380 Amaranthus hybridus HOM05D005210 ORTHO05D010080 3.3e-46 189.1 199 50.3
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 4.8e-45 185.3 142 74.6
RcHm_v2.0_MTg0498311 Rosa chinensis HOM05D005210 ORTHO05D010080 6.2e-45 184.9 146 73.3
MSTRG.20585 Avicennia marina HOM05D005210 ORTHO05D010080 2.4e-44 183.0 202 50.5
SGA_v2.0_scaffold167G38415 Striga asiatica HOM05D005210 ORTHO05D010080 9.0e-44 181.0 197 51.3
PGSC0003DMG400020779 Solanum tuberosum HOM05D005210 ORTHO05D010080 2.0e-43 179.9 282 45.7
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 2.2e-42 176.4 133 75.9
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 2.2e-42 176.4 133 75.9
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 2.2e-42 176.4 133 75.9
ECA236G2402 Erigeron canadensis HOM05D005210 ORTHO05D010080 2.7e-40 169.5 206 43.2
Aqoxy4G00327 Aquilegia oxysepala HOM05D005210 ORTHO05D010080 4.6e-40 168.7 211 45.0
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 7.9e-40 167.9 127 78.0
SGA_v2.0_scaffold119G32726 Striga asiatica HOM05D005210 ORTHO05D010080 1.0e-39 167.5 197 46.7
SalBow8G1406 Salvia bowleyana HOM05D005210 ORTHO05D010080 8.7e-39 164.5 202 45.0
Migut.B01305 Erythranthe guttata HOM05D005210 ORTHO05D010080 2.5e-38 162.9 203 46.8
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 5.6e-38 161.8 127 68.5
Oeu061104.1 Olea europaea HOM05D000700 ORTHO05D010080 1.3e-37 160.6 139 59.0
SEGI_01777 Sequoiadendron giganteum HOM05D005210 ORTHO05D010080 3.4e-35 152.5 219 41.1
QL04p020150 Quercus lobata HOM05D005210 ORTHO05D010080 4.2e-33 145.6 104 93.3
unitig_750.g28447 Utricularia gibba HOM05D005210 ORTHO05D010080 2.7e-32 142.9 197 42.6
Peaxi162Scf01267g00005 Petunia axillaris HOM05D005210 ORTHO05D010080 6.7e-31 138.3 167 55.1
Sed0004476 Sechium edule HOM05D005210 ORTHO05D010080 4.3e-30 135.6 91 86.8
RcHm_v2.0_Chr2g0148221 Rosa chinensis HOM05D005210 ORTHO05D010080 1.3e-29 134.0 118 63.6
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-29 133.3 109 74.3
CDE02G1246 Ceratophyllum demersum HOM05D001325 ORTHO05D010080 4.1e-28 129.0 125 75.2
Peaxi162Scf01462g00001 Petunia axillaris HOM05D005210 ORTHO05D010080 9.0e-28 127.9 97 79.4
Nitab4.5_0003632g0030 Nicotiana tabacum HOM05D005210 ORTHO05D034847 4.6e-24 115.5 89 65.2
Lalb_Chr17g0337341 Lupinus albus HOM05D005210 ORTHO05D010080 1.0e-23 114.4 68 85.3
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.8e-23 113.6 164 50.0
CsaV3_5G017030 Cucumis sativus L. HOM05D005210 ORTHO05D010080 5.7e-22 108.6 85 78.8
arahy.Tifrunner.gnm1.ann1.03NBHP Arachis hypogaea HOM05D005210 ORTHO05D010080 4.1e-20 102.4 87 72.4
arahy.Tifrunner.gnm1.ann1.ZXP4DA Arachis hypogaea HOM05D005210 ORTHO05D010080 4.1e-20 102.4 91 62.6
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 2.6e-19 99.8 70 85.7
RcHm_v2.0_Chr2g0148231 Rosa chinensis HOM05D005210 ORTHO05D010080 3.4e-19 99.4 70 72.9
Nitab4.5_0001152g0440 Nicotiana tabacum HOM05D005210 ORTHO05D010080 5.9e-19 98.6 65 76.9
Hma1.2p1_0038F.1_g024120 Hydrangea macrophylla HOM05D005210 ORTHO05D010080 1.4e-17 94.0 59 78.0
CsaV3_5G020380 Cucumis sativus L. HOM05D005210 ORTHO05D010080 3.6e-16 89.4 58 77.6
Ciclev10017151m.g Citrus clementina HOM05D005210 ORTHO05D010080 6.1e-16 88.6 110 49.1
Nitab4.5_0000345g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.0e-14 83.6 62 85.5
Lalb_Chr03g0038471 Lupinus albus HOM05D005210 ORTHO05D010080 3.3e-14 82.8 50 82.0
Migut.B01023 Erythranthe guttata HOM05D005210 ORTHO05D010080 2.8e-13 79.7 176 35.8
CAN.G505.4 Capsicum annuum HOM05D005210 ORTHO05D010080 1.4e-12 77.4 46 78.3
CAN.G1.22 Capsicum annuum HOM05D024148 ORTHO05D024823 3.4e-11 72.8 39 89.7
Nitab4.5_0000593g0150 Nicotiana tabacum HOM05D005210 ORTHO05D010080 3.8e-10 69.3 148 42.6
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-09 67.0 36 88.9
AagrBONN_evm.TU.Sc2ySwM_368.3250 Anthoceros agrestis HOM05D005210 ORTHO05D010080 3.0e-07 59.7 88 43.2
SMO364G0802 Selaginella moellendorffii HOM05D005210 ORTHO05D010080 5.7e-06 55.5 76 31.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 5.7e-06 55.5 78 41.0


User provided reference genes

Program Settings