Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.4e-45 185.3 103 100.0
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 2.4e-45 185.3 103 100.0
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 4.3e-42 174.5 98 96.9
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 5.6e-42 174.1 96 99.0
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 2.3e-40 168.7 96 95.8
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 2.3e-40 168.7 96 95.8
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 2.3e-40 168.7 96 95.8
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 3.1e-40 168.3 95 96.8
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 2.6e-39 165.2 95 95.8
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 2.2e-38 162.2 96 93.8
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 1.1e-37 159.8 90 100.0
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 5.4e-37 157.5 90 98.9
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 5.4e-37 157.5 90 98.9
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 5.4e-37 157.5 90 98.9
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 5.4e-37 157.5 90 98.9
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 5.4e-37 157.5 90 98.9
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 2.7e-36 155.2 90 97.8
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 2.7e-36 155.2 90 97.8
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 2.7e-36 155.2 90 97.8
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 4.6e-36 154.5 90 97.8
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 4.6e-36 154.5 90 97.8
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 4.6e-36 154.5 90 97.8
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 6.0e-36 154.1 90 96.7
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 7.8e-36 153.7 90 96.7
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 2.3e-35 152.1 90 95.6
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 2.3e-35 152.1 90 95.6
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 4.3e-34 147.9 82 97.6
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 5.6e-34 147.5 84 97.6
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 5.6e-34 147.5 84 97.6
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 1.6e-33 146.0 86 95.3
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 2.1e-33 145.6 82 96.3
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 2.8e-33 145.2 83 97.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 2.8e-33 145.2 90 92.2
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.8e-33 145.2 90 92.2
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 2.8e-33 145.2 88 94.3
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 2.8e-33 145.2 92 88.0
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 2.3e-32 142.1 85 92.9
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 6.8e-32 140.6 81 98.8
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 3.4e-31 138.3 90 90.0
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 3.4e-31 138.3 90 90.0
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.3e-30 136.3 89 87.6
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 1.7e-30 136.0 78 98.7
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.2e-29 131.7 79 92.4
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.2e-29 131.7 79 92.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.6e-28 129.4 81 87.7
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 6.0e-28 127.5 72 98.6
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 6.0e-28 127.5 90 86.7
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 6.0e-28 127.5 90 86.7
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 6.0e-28 127.5 90 86.7
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 3.9e-27 124.8 70 98.6
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 3.9e-27 124.8 75 90.7
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 4.3e-26 121.3 70 97.1
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 8.1e-25 117.1 71 94.4
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 5.2e-24 114.4 90 77.8
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 2.6e-23 112.1 69 92.8
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 7.6e-23 110.5 62 98.4
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 2.2e-22 109.0 63 96.8
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 6.4e-22 107.5 68 91.2
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 3.3e-18 95.1 67 82.1
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 7.3e-18 94.0 54 96.3
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 9.6e-18 93.6 65 86.2
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 4.4e-15 84.7 50 94.0
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 1.3e-14 83.2 54 83.3
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 4.2e-13 78.2 45 95.6
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 4.2e-13 78.2 45 95.6
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 4.2e-13 78.2 45 95.6
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.4e-13 77.8 54 79.6
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 2.1e-12 75.9 75 62.7
Oeu013685.1 Olea europaea HOM05D008204 ORTHO05D010378 1.0e-11 73.6 42 90.5
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 7.3e-10 67.4 43 86.0
SEGI_26273 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 2.8e-09 65.5 57 71.9
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 1.4e-08 63.2 70 57.1
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 1.8e-08 62.8 44 81.8
C02p41480 Brassica napus HOM05D008204 ORTHO05D010378 4.5e-07 58.2 70 58.6
BolC2t10165H Brassica oleracea HOM05D008204 ORTHO05D010378 4.5e-07 58.2 70 58.6
Nitab4.5_0001152g0280 Nicotiana tabacum HOM05D008204 ORTHO05D016167 5.8e-07 57.8 37 83.8
Nitab4.5_0000172g2070 Nicotiana tabacum HOM05D008204 ORTHO05D010378 2.2e-06 55.8 32 90.6
BraA02t07598Z Brassica rapa HOM05D008204 ORTHO05D010378 8.4e-06 53.9 38 76.3


User provided reference genes

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