Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1181.8 579 100.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1175.6 579 99.8
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 0.0e+00 1157.9 581 98.3
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1126.3 557 99.3
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 0.0e+00 1100.9 581 94.3
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 0.0e+00 1088.6 580 93.4
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 0.0e+00 1087.0 581 92.8
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 0.0e+00 1087.0 581 92.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 0.0e+00 1082.8 546 97.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 0.0e+00 1080.5 578 93.3
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 0.0e+00 1080.5 578 93.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.6e-308 1062.0 577 91.9
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.4e-307 1058.9 579 91.4
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-307 1058.1 579 91.7
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-302 1042.7 574 90.9
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-302 1042.7 574 90.9
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-302 1042.7 574 90.9
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-302 1042.7 574 90.9
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 3.0e-302 1041.2 576 91.3
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.9e-301 1038.5 566 91.5
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.2e-300 1035.0 579 90.7
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 4.8e-300 1033.9 573 90.8
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-296 1022.7 577 89.4
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.5e-296 1021.5 581 89.5
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.5e-296 1020.4 577 89.1
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.6e-295 1017.3 569 90.2
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.6e-295 1017.3 569 90.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.2e-289 998.4 582 88.7
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.2e-289 998.4 582 88.7
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.2e-289 998.4 582 88.7
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.2e-289 998.4 582 88.7
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.2e-289 998.4 582 88.7
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.2e-289 998.4 582 88.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.2e-287 992.6 565 87.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.1e-279 965.3 508 94.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.6e-279 964.5 551 87.8
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 5.2e-278 960.7 575 84.5
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 2.2e-273 945.3 580 83.8
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 3.2e-272 941.4 573 83.8
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 4.1e-259 897.9 578 81.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-257 893.3 574 80.0
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 3.6e-255 884.8 554 81.9
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.2e-242 843.2 477 89.3
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.0e-225 785.4 492 83.3
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.1e-215 752.7 397 95.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 8.7e-209 730.7 397 93.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-198 696.0 473 79.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.9e-196 689.1 460 77.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 7.1e-195 684.5 373 90.9
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 7.1e-195 684.5 373 90.9
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.7e-194 682.6 400 86.0
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.8e-193 679.9 373 90.6
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.9e-193 678.7 373 90.3
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.9e-192 676.4 373 90.1
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.2e-186 657.1 577 62.9
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-180 636.3 361 89.5
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.1e-178 628.2 579 62.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-174 617.5 390 82.3
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 3.4e-173 612.5 319 95.3
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 6.5e-172 608.2 400 79.5
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.3e-169 599.7 372 83.3
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.0e-168 596.7 362 85.4
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 8.2e-167 591.3 319 92.8
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.1e-154 550.1 293 94.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.4e-153 547.4 579 55.4
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.8e-151 539.7 579 54.9
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.8e-142 510.4 307 85.0
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 7.3e-139 498.4 293 85.7
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 4.4e-136 489.2 260 93.8
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 4.1e-134 482.6 373 70.2
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-129 467.6 272 86.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 5.2e-129 465.7 297 81.5
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.8e-128 461.5 286 83.2
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-126 456.8 306 76.8
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-121 441.4 277 81.6
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-119 433.0 244 89.3
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 8.3e-119 431.8 397 62.0
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 8.6e-116 421.8 239 90.8
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.9e-115 420.6 266 80.8
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.3e-111 407.9 219 93.2
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-111 406.8 293 74.7
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-111 406.8 293 74.7
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.1e-107 394.8 209 92.8
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 4.7e-106 389.4 235 80.4
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.8e-105 387.5 205 93.2
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.8e-105 387.5 205 93.2
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.2e-105 386.0 861 37.5
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 6.8e-105 385.6 205 92.7
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-104 384.0 274 72.6
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.2e-102 376.7 198 93.9
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.7e-101 373.6 198 93.4
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 6.0e-93 345.9 287 66.6
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 2.3e-92 344.0 198 89.4
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.5e-91 340.5 191 92.7
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 334.3 192 83.9
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-89 334.3 192 83.9
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-88 330.5 181 93.9
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 6.4e-87 325.9 173 91.9
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 9.3e-86 322.0 265 66.4
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 6.0e-85 319.3 177 88.7
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.3e-84 317.4 176 88.6
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 2.5e-83 313.9 264 65.9
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 8.1e-82 308.9 265 64.2
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-81 308.5 177 86.4
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.6e-80 302.4 171 91.2
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.8e-79 300.1 239 66.5
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.9e-77 292.4 160 91.2
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.0e-76 290.4 220 72.7
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.3e-74 285.0 164 87.2
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.3e-74 282.7 227 69.2
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-72 278.5 145 91.7
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.0e-68 265.4 349 46.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 3.0e-68 263.8 173 78.0
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 3.0e-68 263.8 173 78.0
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 6.7e-68 262.7 137 96.4
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.7e-66 256.9 180 74.4
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.0e-63 248.8 136 93.4
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-63 248.8 135 93.3
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.9e-62 244.6 273 54.9
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 1.1e-59 235.3 143 76.9
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 2.6e-59 234.2 120 88.3
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.3e-58 231.9 134 89.6
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.8e-57 228.0 122 94.3
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 2.6e-56 224.2 148 74.3
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 5.5e-54 216.5 118 83.9
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-50 204.9 123 86.2
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 3.7e-50 203.8 116 90.5
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 2.4e-49 201.1 113 88.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.1e-49 200.7 125 82.4
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 5.3e-49 199.9 122 84.4
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 2.0e-48 198.0 108 94.4
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 7.7e-48 196.1 129 78.3
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.9e-47 194.1 123 81.3
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 3.8e-47 193.7 127 81.9
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 5.5e-46 189.9 104 93.3
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-42 176.8 332 40.7
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 9.1e-41 172.6 110 76.4
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-40 171.8 165 61.8
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-40 171.0 115 78.3
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-35 153.7 94 86.2
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.3e-34 152.1 75 98.7
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.7e-34 151.8 91 85.7
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 5.5e-30 136.7 138 57.2
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 6.1e-29 133.3 65 96.9
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 1.0e-28 132.5 77 84.4
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.8e-28 129.8 248 37.9
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.4e-27 127.5 93 74.2
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 2.4e-25 121.3 76 80.3
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 2.5e-22 111.3 70 72.9
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.3e-22 110.5 62 87.1
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 3.6e-21 107.5 198 37.4
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.9e-20 102.8 168 41.1
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-19 102.1 69 76.8
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.3e-18 99.0 64 73.4
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 2.2e-18 98.2 49 93.9
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 8.3e-18 96.3 97 55.7
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-17 94.4 65 69.2
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.6e-16 92.0 51 84.3
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 7.8e-16 89.7 52 73.1
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.3e-15 89.0 60 76.7
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.3e-15 88.2 53 90.6
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.3e-15 88.2 145 40.0
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.9e-15 87.4 115 47.0
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 9.5e-14 82.8 60 73.3
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 8.0e-13 79.7 84 53.6
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 1.8e-12 78.6 50 78.0
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 1.8e-12 78.6 99 50.5
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.0e-11 75.1 199 31.7
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 2.6e-11 74.7 45 84.4
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-11 74.7 67 59.7
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 5.8e-11 73.6 50 64.0
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 5.8e-11 73.6 63 60.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 2.2e-10 71.6 47 72.3
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-09 68.2 45 77.8
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 5.4e-09 67.0 29 96.6
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.4e-09 67.0 54 68.5
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.0e-09 66.6 49 67.3
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 9.2e-09 66.2 34 85.3
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.6e-08 65.5 53 64.2
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.5e-06 56.2 44 63.6
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 9.5e-06 56.2 28 92.9


User provided reference genes

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