Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.5e-226 788.5 411 100.0
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.5e-226 788.5 411 100.0
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.5e-226 788.5 411 100.0
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.5e-101 374.0 203 97.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 2.1e-100 370.2 203 96.1
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 2.8e-100 369.8 203 96.1
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 6.2e-100 368.6 203 95.6
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-99 366.7 203 95.1
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-99 366.7 203 95.1
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-99 366.7 203 95.1
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 2.3e-99 366.7 203 95.1
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 4.4e-98 362.5 211 91.9
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 5.8e-98 362.1 202 94.6
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 5.8e-98 362.1 202 94.6
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 2.2e-97 360.1 223 87.9
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 6.4e-97 358.6 229 84.3
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 8.3e-97 358.2 203 93.6
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 8.3e-97 358.2 203 93.6
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.1e-96 357.8 198 95.5
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.1e-96 357.8 207 92.3
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 3.2e-96 356.3 205 93.7
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 4.1e-96 355.9 195 95.4
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.6e-95 354.0 205 93.2
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.6e-95 354.0 207 91.3
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 3.5e-95 352.8 203 92.6
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 6.0e-95 352.1 202 93.1
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 6.0e-95 352.1 202 93.1
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 2.5e-93 346.7 205 90.2
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 2.5e-93 346.7 205 90.2
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 7.3e-93 345.1 205 89.8
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.4e-88 330.9 183 94.5
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.2e-88 329.7 207 85.0
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.7e-87 326.6 207 84.5
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.0e-86 324.7 207 83.1
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.6e-84 317.4 187 90.4
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.6e-84 317.4 207 82.6
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 3.4e-82 309.7 204 82.4
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 4.4e-82 309.3 176 92.6
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 7.6e-82 308.5 198 85.4
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 2.7e-79 300.1 223 77.1
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.3e-77 292.0 207 79.7
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 1.3e-73 281.2 157 92.4
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 4.9e-73 279.3 148 96.6
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.7e-70 270.8 207 75.8
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-64 251.5 176 79.0
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 5.4e-64 249.2 154 86.4
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 1.2e-63 248.1 140 92.1
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 5.3e-59 232.6 130 93.1
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 6.9e-59 232.3 124 97.6
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 9.9e-58 228.4 130 93.1
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.1e-55 220.7 148 78.4
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.3e-49 201.4 117 89.7
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 4.9e-49 199.5 184 62.5
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 9.3e-48 195.3 197 62.9
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 5.1e-46 189.5 103 97.1
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 1.3e-41 174.9 115 82.6
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 3.2e-40 170.2 100 87.0
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 8.7e-38 162.2 89 97.8
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 1.1e-37 161.8 88 98.9
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.3e-36 158.3 184 57.1
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 4.8e-36 156.4 95 91.6
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 9.4e-32 142.1 81 91.4
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.1e-27 128.6 175 53.1
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 1.5e-26 124.8 93 73.1
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 2.9e-25 120.6 68 94.1
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.0e-22 112.1 131 56.5
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-19 101.3 64 75.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.1e-19 100.5 61 83.6
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 5.3e-19 99.8 71 84.5
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 9.1e-19 99.0 57 78.9
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 2.5e-16 90.9 57 87.7
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 4.7e-15 86.7 63 77.8
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 8.0e-15 85.9 49 89.8
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 4.0e-14 83.6 89 61.8
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.3e-12 78.6 44 93.2
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 1.2e-10 72.0 37 94.6
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-09 68.9 37 91.9
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-09 68.9 37 91.9
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 4.2e-08 63.5 40 85.0
AT2G07718 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.1e-07 61.2 34 94.1
ATMG00590 Arabidopsis thaliana HOM05D014754 ORTHO05D017434 2.1e-07 61.2 34 94.1
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 2.1e-07 61.2 34 94.1


User provided reference genes

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