Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-106 389.4 189 100.0
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-106 389.4 189 100.0
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-106 389.4 189 100.0
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.5e-106 389.4 189 100.0
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.6e-103 379.4 189 97.9
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-102 375.9 189 96.8
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-102 374.8 189 96.8
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 3.9e-102 374.8 189 96.8
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 3.9e-102 374.8 188 96.3
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-102 374.8 189 96.8
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-102 374.8 189 96.8
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.9e-102 374.8 189 96.8
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 3.9e-102 374.8 189 96.8
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.1e-101 373.2 188 96.8
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 2.0e-101 372.5 189 96.8
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 4.4e-101 371.3 189 96.3
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-100 368.2 189 95.8
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-100 368.2 189 95.8
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-100 368.2 189 95.8
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 3.7e-100 368.2 189 95.8
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 3.7e-100 368.2 188 95.7
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 8.2e-100 367.1 189 95.8
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.1e-99 366.7 189 94.2
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 7.0e-99 364.0 186 95.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 2.0e-98 362.5 189 94.7
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 2.0e-98 362.5 189 94.7
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 2.0e-98 362.5 189 94.7
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 2.0e-98 362.5 189 94.7
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.0e-98 362.5 189 94.7
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 2.0e-98 362.5 189 94.7
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 7.7e-98 360.5 189 94.2
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 7.7e-98 360.5 189 94.2
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.0e-97 360.1 189 93.7
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.9e-97 358.6 188 93.6
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 6.5e-97 357.5 188 93.6
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 8.5e-97 357.1 185 95.1
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.5e-96 356.3 185 94.6
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.5e-96 355.5 185 94.1
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.2e-96 355.1 185 93.5
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 4.2e-96 354.8 189 93.7
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 4.2e-96 354.8 189 93.7
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 5.5e-96 354.4 188 93.6
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 9.4e-96 353.6 189 93.1
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 1.2e-95 353.2 189 93.1
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 2.1e-95 352.4 189 93.1
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.8e-94 349.4 185 92.4
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.0e-93 345.9 186 89.8
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.7e-92 341.7 185 91.4
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 9.1e-91 337.0 175 93.1
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 8.5e-89 330.5 176 92.0
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 6.8e-86 320.9 189 87.3
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 8.8e-86 320.5 189 84.7
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 1.6e-79 299.7 189 82.0
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.8e-76 288.9 188 80.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 3.7e-76 288.5 182 82.4
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.8e-75 286.2 172 84.3
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 1.6e-74 283.1 189 78.8
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 2.0e-74 282.7 189 78.8
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.0e-74 282.7 180 80.0
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 2.0e-74 282.7 180 80.0
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 2.0e-74 282.7 189 79.4
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 2.7e-74 282.3 188 78.7
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.3e-73 279.3 185 78.9
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.3e-73 279.3 158 85.4
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.7e-68 261.9 189 74.1
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 9.2e-67 257.3 149 84.6
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-60 236.9 167 73.7
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 3.2e-59 232.3 183 69.4
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.6e-58 229.9 175 70.9
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 5.6e-56 221.5 169 72.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-55 220.3 169 68.6
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.6e-55 218.8 164 73.2
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-53 212.6 151 72.8
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 3.0e-49 199.1 105 91.4
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 3.0e-49 199.1 121 76.9
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 3.9e-49 198.7 164 65.2
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 2.5e-48 196.1 95 97.9
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 4.3e-48 195.3 149 66.4
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 3.6e-47 192.2 94 96.8
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 1.2e-45 187.2 183 60.1
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-43 180.6 109 80.7
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 7.8e-42 174.5 91 92.3
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 8.7e-41 171.0 99 84.8
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.4e-38 163.7 82 98.8
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.8e-38 163.3 108 75.9
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 4.0e-38 162.2 80 100.0
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 3.8e-36 155.6 109 75.2
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 1.1e-35 154.1 89 84.3
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 1.4e-35 153.7 85 88.2
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.4e-29 132.5 88 73.9
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 3.4e-29 132.5 72 94.4
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 1.1e-24 117.5 61 96.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 3.3e-24 115.9 97 58.8
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 2.1e-23 113.2 188 35.1
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.8e-22 110.2 117 58.1
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 5.3e-22 108.6 107 57.0
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 5.3e-22 108.6 70 78.6
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 1.9e-19 100.1 53 86.8
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.1e-14 84.3 68 72.1
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 1.5e-13 80.5 102 47.1
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-12 77.4 40 95.0
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 1.4e-11 73.9 46 78.3
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 2.5e-11 73.2 50 78.0
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 5.5e-11 72.0 65 63.1
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 1.3e-09 67.4 36 97.2
SHI30018 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-08 64.3 56 64.3
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-07 60.8 61 55.7
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.8e-07 59.7 31 100.0


User provided reference genes

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