Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 1.2e-33 146.0 73 100.0
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 6.3e-24 113.6 64 89.1
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 5.9e-22 107.1 64 81.2
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 1.3e-21 105.9 73 72.6
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 2.3e-21 105.1 73 71.2
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 5.0e-21 104.0 63 79.4
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 8.6e-21 103.2 73 68.5
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 3.3e-20 101.3 73 71.2
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 5.5e-20 100.5 73 68.5
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 7.2e-20 100.1 62 79.0
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 9.5e-20 99.8 64 76.6
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 9.5e-20 99.8 64 76.6
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 9.5e-20 99.8 73 71.2
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 1.2e-19 99.4 64 75.0
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 1.2e-19 99.4 64 75.0
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.2e-19 99.4 63 76.2
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 1.6e-19 99.0 66 71.2
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 1.6e-19 99.0 63 74.6
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 2.1e-19 98.6 72 69.4
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.1e-19 98.6 72 69.4
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 2.1e-19 98.6 72 69.4
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 2.8e-19 98.2 73 68.5
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 2.8e-19 98.2 73 69.9
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 3.6e-19 97.8 63 73.0
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 4.7e-19 97.4 63 74.6
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 4.7e-19 97.4 61 75.4
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 4.7e-19 97.4 60 76.7
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 8.0e-19 96.7 69 68.1
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 8.0e-19 96.7 63 73.0
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 1.0e-18 96.3 63 73.0
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 1.0e-18 96.3 64 75.0
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 1.0e-18 96.3 63 71.4
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 1.0e-18 96.3 63 73.0
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 1.0e-18 96.3 68 69.1
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 1.8e-18 95.5 68 67.6
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 2.3e-18 95.1 73 67.1
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 5.2e-18 94.0 63 68.3
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 5.2e-18 94.0 69 71.0
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 5.2e-18 94.0 57 78.9
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 5.2e-18 94.0 57 78.9
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 5.2e-18 94.0 57 78.9
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 6.8e-18 93.6 63 68.3
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 6.8e-18 93.6 63 74.6
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 8.9e-18 93.2 65 73.8
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 8.9e-18 93.2 63 66.7
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 2.0e-17 92.0 62 69.4
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 2.6e-17 91.7 54 79.6
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 3.4e-17 91.3 60 70.0
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 4.4e-17 90.9 63 68.3
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 4.4e-17 90.9 63 65.1
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 4.4e-17 90.9 73 65.8
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 4.4e-17 90.9 63 66.7
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 5.7e-17 90.5 68 64.7
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 1.3e-16 89.4 64 67.2
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 2.2e-16 88.6 63 63.5
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 2.2e-16 88.6 63 63.5
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 3.7e-16 87.8 63 61.9
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 3.7e-16 87.8 63 61.9
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 3.7e-16 87.8 62 67.7
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 3.7e-16 87.8 71 66.2
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 3.7e-16 87.8 71 66.2
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 8.3e-16 86.7 63 60.3
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 8.3e-16 86.7 71 59.2
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 8.3e-16 86.7 65 64.6
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.1e-15 86.3 63 63.5
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 1.1e-15 86.3 69 65.2
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.8e-15 85.5 63 63.5
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 2.4e-15 85.1 63 63.5
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 2.4e-15 85.1 63 63.5
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 2.4e-15 85.1 69 69.6
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 4.1e-15 84.3 60 63.3
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 4.1e-15 84.3 63 63.5
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 4.1e-15 84.3 58 70.7
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 5.4e-15 84.0 63 65.1
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 5.4e-15 84.0 56 69.6
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 9.2e-15 83.2 60 68.3
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.6e-14 82.4 63 61.9
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.6e-14 82.4 71 63.4
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 1.6e-14 82.4 63 61.9
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 2.0e-14 82.0 63 61.9
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 3.5e-14 81.3 60 68.3
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 7.8e-14 80.1 63 65.1
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 7.8e-14 80.1 64 62.5
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 1.3e-13 79.3 50 82.0
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 2.9e-13 78.2 63 61.9
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 2.9e-13 78.2 63 61.9
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 2.9e-13 78.2 61 59.0
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 7.3e-12 73.6 55 67.3
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 1.2e-11 72.8 71 54.9
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 2.8e-11 71.6 54 63.0
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.0e-10 69.7 59 54.2
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.0e-10 69.7 50 70.0
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 4.9e-08 60.8 50 62.0
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 4.1e-07 57.8 40 75.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 9.2e-07 56.6 40 72.5
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 1.2e-06 56.2 50 64.0
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 2.0e-06 55.5 46 63.0
TPR.G29629 Trifolium pratense HOM05D007503 ORTHO05D009487 2.0e-06 55.5 40 72.5
HPP92_021450 Vanilla planifolia HOM05D007503 ORTHO05D009487 7.8e-06 53.5 37 78.4


User provided reference genes

Program Settings