Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 3.2e-223 778.1 389 100.0
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 5.7e-180 634.4 338 92.9
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 2.8e-179 632.1 338 92.3
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 4.1e-178 628.2 338 92.3
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 7.0e-178 627.5 338 91.4
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 7.0e-178 627.5 338 91.7
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 9.1e-178 627.1 338 91.4
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 5.9e-177 624.4 338 91.1
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 5.9e-177 624.4 338 91.4
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 7.7e-177 624.0 332 92.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.7e-176 622.9 338 91.1
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 1.7e-176 622.9 338 91.1
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 1.7e-176 622.9 338 90.8
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 2.2e-176 622.5 338 90.8
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.9e-176 622.1 332 92.8
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 6.5e-176 620.9 338 90.5
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 6.5e-176 620.9 338 89.9
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 6.5e-176 620.9 338 91.1
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 8.5e-176 620.5 338 90.5
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.9e-175 619.4 339 90.6
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 5.5e-175 617.8 335 90.1
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 7.2e-175 617.5 338 89.6
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.2e-174 616.7 334 91.3
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 1.2e-174 616.7 338 90.2
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.6e-174 616.3 338 89.6
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 1.6e-174 616.3 338 89.3
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 1.6e-174 616.3 339 90.3
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 2.1e-174 615.9 337 90.8
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.7e-174 615.5 338 90.5
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.7e-174 615.5 338 89.3
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 2.7e-174 615.5 338 89.6
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 4.7e-174 614.8 339 90.0
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 6.1e-174 614.4 333 90.7
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 6.1e-174 614.4 339 90.6
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.4e-173 613.2 336 89.9
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.4e-173 613.2 339 90.3
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 3.0e-173 612.1 354 86.7
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 3.0e-173 612.1 338 89.6
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 5.2e-173 611.3 339 89.7
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 8.8e-173 610.5 339 88.5
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 2.0e-172 609.4 339 88.8
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 5.7e-172 607.8 338 89.3
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 5.7e-172 607.8 338 89.1
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 7.4e-172 607.4 338 89.1
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 7.4e-172 607.4 333 90.4
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 7.4e-172 607.4 338 88.2
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 7.4e-172 607.4 339 88.8
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 7.4e-172 607.4 339 89.7
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.4e-172 607.4 339 88.8
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 7.4e-172 607.4 338 88.8
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 1.3e-171 606.7 339 87.3
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.7e-171 606.3 338 88.5
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.7e-171 606.3 338 88.5
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.7e-171 606.3 338 88.5
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.7e-171 606.3 339 88.5
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.2e-171 605.9 338 88.8
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 2.8e-171 605.5 337 88.7
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.7e-171 605.1 338 87.9
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 4.8e-171 604.7 338 87.9
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 6.3e-171 604.4 339 88.2
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 1.4e-170 603.2 337 88.7
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 4.1e-170 601.7 332 88.6
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 5.3e-170 601.3 338 87.6
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 7.0e-170 600.9 340 87.6
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 2.0e-169 599.4 332 88.6
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.0e-169 599.4 334 88.3
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.9e-169 597.8 339 87.3
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 5.9e-169 597.8 337 87.5
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 7.7e-169 597.4 332 88.6
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 1.7e-168 596.3 339 87.0
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.7e-168 596.3 339 87.0
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 6.5e-168 594.3 318 92.1
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.1e-167 593.6 333 87.7
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.9e-167 592.8 338 84.3
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.9e-167 592.8 340 86.2
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 3.2e-167 592.0 358 83.0
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 4.2e-167 591.7 339 86.1
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 5.5e-167 591.3 330 87.6
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 9.4e-167 590.5 332 87.3
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.1e-166 589.3 354 83.9
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 8.0e-166 587.4 313 92.0
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 1.0e-165 587.0 338 88.5
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 1.0e-165 587.0 380 79.2
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 1.5e-164 583.2 315 91.7
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.5e-164 583.2 334 84.7
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 5.7e-164 581.3 321 90.0
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 6.3e-163 577.8 331 86.1
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 1.4e-162 576.6 338 82.5
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 1.4e-162 576.6 348 81.9
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 5.3e-162 574.7 309 90.9
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 7.0e-162 574.3 334 83.5
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 1.2e-161 573.5 335 83.6
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 1.6e-161 573.2 335 83.6
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 1.6e-161 573.2 309 90.6
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 2.0e-161 572.8 335 83.6
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 5.9e-161 571.2 335 82.7
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.0e-160 570.5 337 82.5
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 1.3e-160 570.1 321 86.9
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.3e-160 570.1 335 83.3
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.7e-160 569.7 335 83.0
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 1.7e-160 569.7 335 83.0
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 1.7e-160 569.7 334 83.2
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 2.9e-160 568.9 335 83.0
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 2.9e-160 568.9 335 82.7
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 3.8e-160 568.5 335 82.4
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 3.8e-160 568.5 335 82.7
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 3.8e-160 568.5 335 82.7
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 5.0e-160 568.2 338 82.0
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 8.5e-160 567.4 335 82.4
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 3.2e-159 565.5 335 82.4
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.5e-159 564.7 320 87.2
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 9.4e-159 563.9 335 82.1
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 9.4e-159 563.9 339 84.1
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.6e-158 563.1 334 82.0
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 2.7e-158 562.4 327 82.9
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 1.4e-157 560.1 335 82.1
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 4.0e-157 558.5 350 79.1
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 4.0e-157 558.5 338 84.0
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.7e-155 553.1 341 76.5
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 2.9e-152 542.3 334 78.7
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 8.6e-152 540.8 375 75.7
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 1.5e-151 540.0 335 75.5
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 1.9e-151 539.7 419 69.5
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 2.1e-150 536.2 316 82.6
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 6.1e-150 534.6 338 84.3
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 9.8e-148 527.3 337 74.5
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.2e-145 520.4 337 73.9
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 9.5e-143 510.8 361 72.9
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 1.5e-140 503.4 264 94.3
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.2e-139 499.6 288 85.1
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 4.9e-139 498.4 271 89.7
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.4e-138 496.1 264 93.2
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 2.4e-138 496.1 264 93.2
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.9e-135 486.5 320 73.1
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 2.1e-134 483.0 338 75.1
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 3.7e-131 472.2 338 73.1
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 2.3e-120 436.4 344 65.1
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 5.6e-119 431.8 251 82.9
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 3.6e-118 429.1 238 87.0
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 1.0e-112 411.0 311 63.0
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 8.7e-112 407.9 251 80.1
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 1.4e-109 400.6 244 78.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 4.9e-107 392.1 216 88.0
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.2e-100 370.9 330 57.6
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.5e-100 370.5 317 55.5
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 7.5e-55 218.8 128 83.6
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 2.9e-43 180.3 163 60.1
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 6.6e-35 152.5 180 52.8
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 7.5e-31 139.0 79 84.8
Dinv10886 Davidia involucrata HOM05D000246 ORTHO05D005907 7.0e-29 132.5 79 81.0
Dinv10847 Davidia involucrata HOM05D000246 ORTHO05D005907 6.6e-27 125.9 72 84.7
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 2.5e-26 124.0 74 81.1
COL.COLO4_30406 Corchorus olitorius HOM05D000246 ORTHO05D005907 1.2e-20 105.1 109 56.9
FAN20G1849 Fragaria x ananassa HOM05D000246 ORTHO05D209582 3.1e-16 90.5 51 84.3
Medtr7g064210 Medicago truncatula HOM05D000076 ORTHO05D036729 7.1e-13 79.3 61 70.5
Medtr2g022940 Medicago truncatula HOM05D000871 ORTHO05D036729 3.5e-12 77.0 97 48.5
VMungo0331G1529 Vigna mungo HOM05D000246 ORTHO05D436255 2.3e-11 74.3 41 80.5
HanXRQChr07g0191211 Helianthus annuus HOM05D000246 ORTHO05D224049 3.3e-10 70.5 60 63.3
HanXRQChr10g0296701 Helianthus annuus HOM05D000246 ORTHO05D221073 3.3e-10 70.5 60 63.3
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 3.6e-09 67.0 100 40.0
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 8.4e-06 55.8 34 76.5


User provided reference genes

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