Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 1.5e-98 362.8 177 100.0
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 8.0e-89 330.5 180 87.2
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 2.0e-87 325.9 180 86.7
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 2.2e-86 322.4 180 84.4
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 2.8e-86 322.0 179 84.4
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 2.8e-86 322.0 180 86.7
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 3.7e-86 321.6 180 84.4
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 6.3e-86 320.9 180 85.6
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.8e-85 319.3 180 83.3
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.8e-85 319.3 175 85.7
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 1.8e-85 319.3 180 83.9
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 3.1e-85 318.5 180 82.8
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 4.1e-85 318.2 180 83.9
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 9.1e-85 317.0 180 82.8
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.8
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.2
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 2.0e-84 315.8 180 86.1
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 2.7e-84 315.5 180 83.3
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 82.8
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 7.7e-84 313.9 180 81.7
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 7.7e-84 313.9 180 83.3
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 7.7e-84 313.9 180 80.0
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 7.7e-84 313.9 180 83.3
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 1.7e-83 312.8 180 81.7
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 83.3
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 2.9e-83 312.0 180 81.7
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 5.0e-83 311.2 180 81.7
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 6.6e-83 310.8 180 80.6
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 1.5e-82 309.7 178 83.1
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 1.9e-82 309.3 180 80.6
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.9e-82 309.3 180 82.2
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 2.5e-82 308.9 180 79.4
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 2.5e-82 308.9 180 80.0
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 3.3e-82 308.5 180 80.6
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.2e-82 308.1 180 81.7
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 4.2e-82 308.1 180 81.7
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 5.5e-82 307.8 180 78.3
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 5.5e-82 307.8 180 79.4
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 9.5e-82 307.0 180 80.0
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 9.5e-82 307.0 180 80.0
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 9.5e-82 307.0 180 80.6
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 2.1e-81 305.8 180 78.9
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 2.8e-81 305.4 180 81.1
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 8.0e-81 303.9 178 80.9
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 8.0e-81 303.9 180 79.4
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 8.0e-81 303.9 180 79.4
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 1.0e-80 303.5 180 78.3
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 1.4e-80 303.1 180 80.0
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.8e-80 302.8 180 79.4
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.3e-80 302.4 180 78.9
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 2.0e-79 299.3 180 77.2
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 5.7e-79 297.7 180 76.7
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 7.5e-79 297.4 180 76.1
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 9.8e-79 297.0 180 76.1
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 9.8e-79 297.0 180 75.6
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 1.3e-78 296.6 180 76.1
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.7e-78 296.2 180 75.6
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.7e-78 296.2 180 76.1
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 2.2e-78 295.8 180 75.6
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 2.2e-78 295.8 199 72.4
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 2.8e-78 295.4 181 76.8
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 3.7e-78 295.0 180 75.0
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 3.7e-78 295.0 180 75.0
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 6.3e-78 294.3 180 75.0
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 8.3e-78 293.9 178 76.4
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.1e-77 293.5 180 75.6
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 1.1e-77 293.5 179 77.1
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.2e-77 292.0 180 74.4
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 9.2e-77 290.4 180 75.0
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 9.2e-77 290.4 180 79.4
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.3e-75 286.6 187 72.7
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.6e-75 283.9 165 80.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.1e-74 283.5 177 74.6
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 4.7e-73 278.1 206 67.5
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 2.3e-72 275.8 203 65.0
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 3.1e-72 275.4 160 81.9
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 2.0e-71 272.7 178 73.6
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 2.0e-71 272.7 159 81.8
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 9.8e-71 270.4 177 71.8
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 2.9e-70 268.9 160 80.0
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 3.7e-70 268.5 159 81.8
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 1.4e-69 266.5 161 76.4
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 5.4e-69 264.6 174 73.0
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 9.2e-69 263.8 156 78.8
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.0e-67 260.4 160 75.0
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 1.7e-67 259.6 175 70.9
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.3e-67 259.2 162 74.1
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 3.0e-67 258.8 180 70.6
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 6.6e-67 257.7 172 74.4
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 2.5e-66 255.8 164 74.4
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 4.3e-66 255.0 175 65.7
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 6.8e-64 247.7 167 69.5
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.5e-63 246.5 175 64.6
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 1.7e-62 243.0 139 81.3
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 1.1e-61 240.4 153 75.2
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 1.9e-61 239.6 218 59.6
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 4.1e-61 238.4 175 61.7
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.2e-60 236.9 139 78.4
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 7.6e-55 217.6 171 57.9
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.9e-54 215.7 181 62.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 4.7e-49 198.4 114 78.1
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 1.2e-47 193.7 174 51.1
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 9.9e-47 190.7 121 72.7
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 1.4e-45 186.8 117 72.6
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.4e-45 186.0 182 55.5
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.4e-45 186.0 182 55.5
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 3.0e-43 179.1 146 61.0
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 4.9e-38 161.8 93 80.6
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 3.0e-35 152.5 113 69.0
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 3.0e-35 152.5 174 43.1
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 1.3e-33 147.1 91 73.6
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 3.6e-33 145.6 174 42.0
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 6.2e-33 144.8 95 70.5
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 3.4e-31 139.0 116 59.5
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 7.6e-31 137.9 177 45.8
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 5.3e-24 115.2 80 70.0
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.0e-23 113.2 71 66.2
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 6.0e-20 101.7 99 52.5
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 3.9e-19 99.0 56 82.1
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.9e-18 96.7 65 70.8
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 2.1e-17 93.2 50 88.0
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 4.8e-17 92.0 56 80.4
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 1.8e-16 90.1 100 51.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.6e-15 86.3 46 82.6
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.9e-07 58.5 37 75.7


User provided reference genes

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