Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 0.0e+00 1295.4 649 100.0
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 5.4e-167 592.0 635 53.7
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 9.3e-151 538.1 700 45.6
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 1.3e-144 517.7 688 45.9
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 1.3e-141 507.7 697 46.3
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.8e-138 497.3 677 44.3
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.5e-132 477.6 745 40.4
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 2.4e-130 470.3 764 41.0
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 2.4e-130 470.3 721 41.5
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.5e-129 467.6 667 42.6
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.0e-129 467.2 694 42.5
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 1.9e-127 460.7 677 42.8
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 7.1e-127 458.8 689 42.7
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.1e-126 457.2 657 42.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.1e-126 457.2 800 40.1
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 3.5e-126 456.4 662 42.0
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 6.7e-125 452.2 733 40.2
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.1e-124 451.4 667 41.8
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 6.3e-123 445.7 778 39.3
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.3e-122 442.6 682 41.6
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 6.9e-122 442.2 673 41.3
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 4.5e-121 439.5 683 41.9
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 2.5e-119 433.7 696 39.5
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 5.5e-119 432.6 701 38.9
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.2e-118 431.4 798 38.5
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 5.1e-117 426.0 766 38.6
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 5.1e-117 426.0 658 41.6
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 6.7e-117 425.6 777 38.4
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 1.1e-116 424.9 668 39.2
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 9.7e-116 421.8 645 43.6
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 2.4e-114 417.2 606 44.2
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 6.9e-114 415.6 670 39.9
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 6.9e-114 415.6 707 38.8
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.0e-114 415.2 651 40.4
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 1.2e-113 414.8 687 38.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 2.6e-113 413.7 635 41.3
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.1e-111 408.3 668 41.2
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-111 407.9 757 37.8
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 5.5e-111 406.0 678 40.1
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 4.6e-110 402.9 665 41.2
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 6.7e-109 399.1 663 38.6
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 5.7e-108 396.0 799 36.5
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 2.2e-107 394.0 860 34.8
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.8e-107 392.9 762 36.6
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.4e-106 391.3 742 37.5
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.6e-105 387.1 662 37.2
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 7.7e-105 385.6 789 35.1
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 7.7e-105 385.6 754 36.1
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.0e-104 385.2 670 39.7
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.7e-104 384.4 673 39.5
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 2.9e-104 383.6 629 40.4
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 2.7e-102 377.1 862 33.2
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 6.7e-101 372.5 657 37.1
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 2.8e-99 367.1 626 38.0
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.1e-98 363.2 842 32.8
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.0e-97 360.9 431 48.3
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.6e-97 360.5 725 35.7
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.0e-96 358.6 835 32.5
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 1.3e-91 341.7 670 36.3
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 1.4e-90 338.2 579 38.0
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 7.0e-90 335.9 722 34.2
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 9.1e-90 335.5 647 35.9
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.2e-89 335.1 640 37.0
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.6e-89 334.7 553 40.5
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.6e-89 334.7 546 37.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 2.0e-89 334.3 640 36.7
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 1.0e-88 332.0 629 36.2
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.5e-87 328.2 325 52.9
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 4.2e-87 326.6 660 35.2
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 5.5e-87 326.2 670 35.5
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 9.4e-87 325.5 648 35.8
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.0e-85 322.0 763 33.6
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.8e-85 321.2 426 42.5
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 5.2e-85 319.7 691 36.5
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.5e-84 318.2 684 33.5
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.0e-84 317.8 654 35.6
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 5.7e-84 316.2 660 35.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.2e-83 314.3 651 35.2
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.7e-83 313.5 708 35.0
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 6.3e-83 312.8 312 54.8
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 8.3e-83 312.4 651 35.0
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.1e-82 312.0 663 35.1
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 1.1e-82 312.0 362 49.2
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.2e-81 308.5 789 32.4
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 3.5e-81 307.0 653 34.9
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 4.5e-81 306.6 310 54.8
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 2.2e-80 304.3 696 34.6
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.7e-78 296.6 293 53.2
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.1e-78 296.2 382 45.5
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.8e-77 294.7 816 30.5
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.0e-77 293.9 312 50.3
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.5e-76 291.6 304 51.3
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.7e-75 288.1 273 54.9
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.9e-75 286.6 320 49.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 9.2e-74 282.3 685 31.7
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 7.7e-73 279.3 714 32.1
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 3.8e-72 276.9 317 46.4
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 8.6e-72 275.8 762 30.3
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 3.0e-69 267.3 325 44.6
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.2e-68 265.4 708 31.9
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 9.8e-68 262.3 299 48.8
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 4.9e-67 260.0 320 44.4
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.2e-66 257.3 679 31.5
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 7.0e-66 256.1 654 32.4
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 1.2e-65 255.4 594 35.2
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.9e-64 250.4 279 49.5
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 3.9e-64 250.4 639 33.3
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.9e-63 248.1 264 53.4
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.9e-63 248.1 647 32.3
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.5e-63 247.7 644 32.0
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.3e-63 247.3 306 47.4
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.1e-62 244.6 315 44.4
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 8.0e-62 242.7 323 41.8
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 5.2e-61 240.0 303 46.2
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 8.3e-59 232.6 275 45.8
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 7.0e-58 229.6 367 39.8
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 4.6e-57 226.9 326 41.7
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 3.3e-55 220.7 578 32.2
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.6e-52 211.1 424 36.1
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.2e-51 208.0 215 50.2
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.9e-51 207.6 262 46.2
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 5.1e-48 196.8 267 42.3
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.3e-47 194.1 213 49.3
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.1e-40 170.2 186 51.6
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.1e-40 170.2 186 51.6
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 5.2e-37 160.2 223 44.8
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 9.9e-36 156.0 168 49.4
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 6.4e-35 153.3 349 34.7
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 7.8e-33 146.4 356 31.2
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.9e-32 144.1 642 25.4
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.5e-31 141.4 226 36.3
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-28 131.3 134 50.7
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 2.4e-26 124.8 188 39.4
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.4e-26 124.8 217 37.3
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 7.1e-26 123.2 416 29.6
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 2.7e-25 121.3 190 38.4
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 3.5e-25 120.9 188 39.4
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 7.9e-25 119.8 152 42.1
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.8e-24 118.6 216 40.3
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 4.3e-23 114.0 211 35.1
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 1.6e-22 112.1 181 38.1
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.8e-22 111.3 131 45.8
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.8e-22 110.5 110 49.1
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 2.4e-21 108.2 137 43.1
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-20 105.9 122 47.5
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 1.2e-20 105.9 138 42.8
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 9.9e-20 102.8 181 36.5
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.7e-19 102.1 168 36.9
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.4e-18 99.0 107 46.7
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.4e-18 98.2 317 29.3
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 1.9e-15 88.6 132 39.4
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 1.0e-11 76.3 201 31.3
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 4.9e-11 73.9 77 49.4
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.1e-09 68.6 106 36.8
QL93p0319_0003 Quercus lobata HOM05D000002 ORTHO05D000001 7.9e-09 66.6 48 68.8
MBI08_g23496_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.8e-08 65.5 45 68.9
Migut.C00084 Erythranthe guttata HOM05D042229 ORTHO05D035173 1.1e-07 62.8 69 39.1
Migut.E00887 Erythranthe guttata HOM05D042229 ORTHO05D035173 3.3e-07 61.2 64 45.3
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 8.2e-06 56.6 290 25.2


User provided reference genes

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