Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 9.0e-187 657.9 333 100.0
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 3.9e-57 227.3 261 45.6
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 1.2e-53 215.7 199 53.3
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 5.9e-53 213.4 224 51.3
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.3e-52 212.2 210 53.3
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 1.8e-49 201.8 302 42.1
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.8e-49 201.8 238 48.7
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 5.7e-48 196.8 226 48.2
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 7.5e-48 196.4 176 55.7
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 1.4e-46 192.2 174 54.0
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 3.1e-46 191.0 216 50.0
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 4.1e-46 190.7 201 51.2
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 5.3e-46 190.3 235 43.4
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 9.1e-46 189.5 186 50.5
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 9.1e-46 189.5 231 45.9
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.2e-45 189.1 224 46.9
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.2e-45 189.1 173 52.6
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.6e-45 188.7 195 49.7
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.0e-45 188.3 235 44.7
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 3.5e-45 187.6 239 45.2
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 7.7e-45 186.4 187 48.7
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 7.7e-45 186.4 213 46.5
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 1.7e-44 185.3 191 49.2
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 1.7e-44 185.3 197 48.7
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 3.8e-44 184.1 195 47.2
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 3.8e-44 184.1 182 51.6
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 5.0e-44 183.7 196 47.4
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.9e-43 181.8 224 46.9
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 4.2e-43 180.6 174 51.1
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 7.2e-43 179.9 172 52.3
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 2.7e-42 177.9 162 53.1
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 1.4e-41 175.6 169 50.3
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 2.3e-41 174.9 233 42.5
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 5.2e-41 173.7 184 48.9
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 5.2e-41 173.7 237 41.4
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.2e-40 172.6 198 44.9
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.2e-40 172.6 198 44.9
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 1.2e-40 172.6 182 48.4
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 3.4e-40 171.0 194 46.9
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.4e-40 170.6 190 45.8
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 7.5e-40 169.9 198 44.4
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 7.5e-40 169.9 171 48.0
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.7e-39 168.7 237 40.1
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 4.8e-39 167.2 172 48.8
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 4.8e-39 167.2 208 44.7
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 6.3e-39 166.8 212 43.4
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 6.3e-39 166.8 206 45.6
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.0e-36 159.5 243 38.3
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 1.9e-35 155.2 169 49.1
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 4.2e-35 154.1 251 39.4
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 7.2e-35 153.3 172 47.7
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 2.1e-34 151.8 211 38.9
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 3.6e-34 151.0 192 41.1
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 3.6e-34 151.0 181 43.1
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 4.7e-34 150.6 223 38.6
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 2.3e-33 148.3 171 42.7
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 2.0e-32 145.2 214 37.9
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 3.4e-32 144.4 220 40.5
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 5.7e-32 143.7 214 36.4
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 4.1e-30 137.5 211 34.1
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 4.5e-29 134.0 269 33.8
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 4.5e-29 134.0 269 33.8
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 1.0e-28 132.9 201 39.3
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 3.8e-28 131.0 218 35.8
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 2.5e-27 128.3 266 33.1
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 2.5e-27 128.3 265 32.8
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.3e-27 127.5 168 44.0
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 5.6e-27 127.1 214 38.3
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.2e-26 125.9 131 48.1
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 1.6e-26 125.6 266 31.6
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 2.1e-26 125.2 208 38.5
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 2.8e-26 124.8 140 45.7
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 1.4e-25 122.5 220 33.2
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 5.2e-25 120.6 200 39.5
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 1.5e-24 119.0 125 47.2
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.5e-24 119.0 139 44.6
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 4.4e-24 117.5 125 49.6
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 3.7e-23 114.4 270 28.9
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 4.9e-23 114.0 264 32.2
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 4.7e-18 97.4 84 54.8
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.8e-17 95.5 84 54.8
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 8.9e-17 93.2 167 37.1
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 6.0e-13 80.5 179 30.2
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 1.5e-11 75.9 133 34.6
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.2e-08 66.2 71 43.7
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.5e-08 65.9 188 26.6
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 2.0e-08 65.5 206 26.7
ATR0326G024 Amborella trichopoda HOM05D000424 ORTHO05D000355 2.6e-08 65.1 159 25.2
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 2.6e-08 65.1 82 37.8
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 4.4e-08 64.3 255 25.1
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 4.4e-08 64.3 206 25.2
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 5.8e-08 63.9 182 26.4
Lj2g0000352 Lotus japonicus HOM05D000424 ORTHO05D000355 7.5e-08 63.5 250 24.0
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.3e-07 62.8 237 23.6
QL06p001583 Quercus lobata HOM05D000424 ORTHO05D000355 1.7e-07 62.4 198 25.8
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 2.2e-07 62.0 154 28.6
Ca_11091_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 2.9e-07 61.6 170 26.5
FvH4_4g00721 Fragaria vesca HOM05D000424 ORTHO05D000355 2.9e-07 61.6 199 27.6
Sed0021022 Sechium edule HOM05D005973 ORTHO05D007285 2.9e-07 61.6 140 28.6
CANSAT80G0799 Cannabis sativa HOM05D005973 ORTHO05D007285 3.7e-07 61.2 137 27.7
Lj5g0007824 Lotus japonicus HOM05D000424 ORTHO05D000355 4.9e-07 60.8 205 24.4
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 6.4e-07 60.5 227 24.2
Thecc.10G003600 Theobroma cacao HOM05D005973 ORTHO05D007285 6.4e-07 60.5 185 26.5
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 8.3e-07 60.1 234 24.4
CiPaw.01G197700 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.1e-06 59.7 216 23.6
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 1.1e-06 59.7 182 25.3
COL.COLO4_19343 Corchorus olitorius HOM05D005973 ORTHO05D007285 1.1e-06 59.7 129 28.7
ECA248G3068 Erigeron canadensis HOM05D005973 ORTHO05D007285 1.1e-06 59.7 199 23.6
Lalb_Chr25g0282721 Lupinus albus HOM05D005973 ORTHO05D007285 1.1e-06 59.7 148 27.7
Sed0014952 Sechium edule HOM05D000424 ORTHO05D000355 1.1e-06 59.7 176 25.6
vmacro19218 Vaccinium macrocarpon HOM05D007173 ORTHO05D009151 1.1e-06 59.7 227 25.1
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 1.4e-06 59.3 212 23.6
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 1.4e-06 59.3 212 23.6
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 1.4e-06 59.3 201 23.4
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 1.9e-06 58.9 129 27.9
HPP92_016090 Vanilla planifolia HOM05D006596 ORTHO05D008497 1.9e-06 58.9 212 23.1
Cfa002200 Carpinus fangiana HOM05D005973 ORTHO05D007285 2.4e-06 58.5 129 30.2
Eucgr.H02347 Eucalyptus grandis HOM05D000424 ORTHO05D000355 2.4e-06 58.5 207 24.2
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 3.2e-06 58.2 129 28.7
Psat6g128160 Pisum sativum HOM05D006596 ORTHO05D008497 3.2e-06 58.2 225 23.1
Prupe.2G027000 Prunus persica HOM05D005973 ORTHO05D007285 3.2e-06 58.2 129 28.7
HPP92_009614 Vanilla planifolia HOM05D000424 ORTHO05D000355 3.2e-06 58.2 176 25.6
HPP92_011236 Vanilla planifolia HOM05D000424 ORTHO05D000355 3.2e-06 58.2 157 24.8
ClCG01G007570 Citrullus lanatus HOM05D005973 ORTHO05D007285 4.1e-06 57.8 129 27.1
Gohir.D11G013700 Gossypium hirsutum HOM05D000424 ORTHO05D000355 4.1e-06 57.8 233 24.5
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 4.1e-06 57.8 153 26.8
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 4.1e-06 57.8 129 27.1
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 4.1e-06 57.8 129 27.9
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 4.1e-06 57.8 191 24.1
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 4.1e-06 57.8 199 23.1
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 5.4e-06 57.4 226 24.3
C01p14480 Brassica napus HOM05D005973 ORTHO05D007285 5.4e-06 57.4 152 27.0
BolC1t01403H Brassica oleracea HOM05D005973 ORTHO05D007285 5.4e-06 57.4 152 27.0
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 5.4e-06 57.4 183 25.1
Ciclev10030824m.g Citrus clementina HOM05D005973 ORTHO05D007285 5.4e-06 57.4 148 26.4
Glyma.16G058400 Glycine max HOM05D000424 ORTHO05D008586 5.4e-06 57.4 179 25.1
Nn1g02389 Nelumbo nucifera HOM05D000424 ORTHO05D000355 5.4e-06 57.4 177 26.6
Aa31LG6G2840 Aethionema arabicum HOM05D005973 ORTHO05D007285 7.1e-06 57.0 129 27.9
BcaC09g51316 Brassica carinata HOM05D005973 ORTHO05D007285 7.1e-06 57.0 152 27.0
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 7.1e-06 57.0 182 24.2
Dinv13001 Davidia involucrata HOM05D000424 ORTHO05D000355 7.1e-06 57.0 115 27.8
Dinv44566 Davidia involucrata HOM05D000424 ORTHO05D000355 7.1e-06 57.0 159 27.7
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 7.1e-06 57.0 155 26.5
Sopen01g003270 Solanum pennellii HOM05D000424 ORTHO05D000355 7.1e-06 57.0 207 23.7
PGSC0003DMG400034554 Solanum tuberosum HOM05D000424 ORTHO05D000355 7.1e-06 57.0 207 23.7
Thecc.06G069800 Theobroma cacao HOM05D000424 ORTHO05D000355 7.1e-06 57.0 230 23.9
TPR.G40248 Trifolium pratense HOM05D006596 ORTHO05D008497 7.1e-06 57.0 225 23.1
arahy.Tifrunner.gnm1.ann1.9Z0TAG Arachis hypogaea HOM05D005973 ORTHO05D007285 9.2e-06 56.6 125 28.8
arahy.Tifrunner.gnm1.ann1.P50PF0 Arachis hypogaea HOM05D005973 ORTHO05D007285 9.2e-06 56.6 125 28.8
AUR62011817 Chenopodium quinoa HOM05D000424 ORTHO05D002854 9.2e-06 56.6 192 24.5
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 9.2e-06 56.6 196 24.5
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 9.2e-06 56.6 199 22.1
MBI16_g32951_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 9.2e-06 56.6 117 29.9
Nitab4.5_0000020g0300 Nicotiana tabacum HOM05D000424 ORTHO05D000355 9.2e-06 56.6 209 25.8
Solyc01g007267.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 9.2e-06 56.6 207 23.7
HPP92_027693 Vanilla planifolia HOM05D000424 ORTHO05D000355 9.2e-06 56.6 157 24.2


User provided reference genes

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