Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09654 Nelumbo nucifera HOM05D000367 ORTHO05D004574 2.8e-94 348.6 174 100.0
vmacro15121 Vaccinium macrocarpon HOM05D000175 ORTHO05D004574 1.7e-22 110.2 103 58.3
CSS0008924 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D004574 4.9e-22 108.6 103 57.3
CSS0027615 Camellia sinensis var. sinensis HOM05D000367 ORTHO05D004574 4.9e-22 108.6 103 57.3
CiPaw.07G115600 Carya illinoinensis HOM05D000175 ORTHO05D004574 6.3e-22 108.2 103 57.3
CiPaw.08G091300 Carya illinoinensis HOM05D000367 ORTHO05D004574 8.3e-22 107.8 103 55.3
Dinv10077 Davidia involucrata HOM05D000175 ORTHO05D004574 8.3e-22 107.8 103 55.3
COL.COLO4_23256 Corchorus olitorius HOM05D000175 ORTHO05D004574 4.1e-21 105.5 103 54.4
Manes.05G002100 Manihot esculenta HOM05D000175 ORTHO05D004574 4.1e-21 105.5 103 55.3
QL12p029060 Quercus lobata HOM05D000175 ORTHO05D004574 5.4e-21 105.1 102 54.9
Actinidia25839 Actinidia chinensis HOM05D000175 ORTHO05D004574 7.0e-21 104.8 103 54.4
PGR044G2705 Punica granatum HOM05D000367 ORTHO05D004574 7.0e-21 104.8 103 55.3
Actinidia21009 Actinidia chinensis HOM05D000175 ORTHO05D004574 9.2e-21 104.4 103 54.4
MBI19_g37400_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D004574 9.2e-21 104.4 103 54.4
Lalb_Chr04g0259911 Lupinus albus HOM05D000175 ORTHO05D004574 1.2e-20 104.0 103 54.4
Prupe.8G270200 Prunus persica HOM05D000175 ORTHO05D004574 1.2e-20 104.0 103 53.4
TAR362G0675 Trochodendron aralioides HOM05D000175 ORTHO05D004574 1.2e-20 104.0 103 54.4
GSVIVG01028094001 Vitis vinifera HOM05D000175 ORTHO05D004574 1.2e-20 104.0 103 54.4
Duzib138G1732 Durio zibethinus HOM05D000175 ORTHO05D004574 1.6e-20 103.6 103 53.4
TAR633G2011 Trochodendron aralioides HOM05D000367 ORTHO05D004574 1.6e-20 103.6 103 54.4
Cpa.g.sc18.17 Carica papaya HOM05D000175 ORTHO05D004574 2.0e-20 103.2 103 53.4
Eucgr.K03532 Eucalyptus grandis HOM05D000175 ORTHO05D004574 2.0e-20 103.2 103 53.4
HanXRQChr01g0000821 Helianthus annuus HOM05D000367 ORTHO05D004574 2.7e-20 102.8 103 53.4
MSTRG.18113 Avicennia marina HOM05D000367 ORTHO05D004574 4.5e-20 102.1 103 52.4
Duzib133G0406 Durio zibethinus HOM05D000175 ORTHO05D004574 4.5e-20 102.1 103 53.4
Duzib211G0540 Durio zibethinus HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 53.4
Gohir.A11G110500 Gossypium hirsutum HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 52.4
Gohir.A11G110600 Gossypium hirsutum HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 52.4
Gohir.D11G115600 Gossypium hirsutum HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 52.4
Gohir.D11G115700 Gossypium hirsutum HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 52.4
Gorai.007G123700 Gossypium raimondii HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 52.4
MD11G1316600 Malus domestica HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 52.4
PSO170G5121 Papaver somniferum HOM05D000175 ORTHO05D004574 5.9e-20 101.7 103 51.5
arahy.Tifrunner.gnm1.ann1.LP608C Arachis hypogaea HOM05D000367 ORTHO05D004574 7.8e-20 101.3 103 53.4
arahy.Tifrunner.gnm1.ann1.LYW6AZ Arachis hypogaea HOM05D000175 ORTHO05D004574 7.8e-20 101.3 103 53.4
Lj2A1203T19 Lonicera japonica HOM05D000175 ORTHO05D004574 7.8e-20 101.3 103 52.4
Potri.002G198000 Populus trichocarpa HOM05D000175 ORTHO05D004574 7.8e-20 101.3 103 52.4
Sabra02G0159600 Salix brachista HOM05D000175 ORTHO05D004574 7.8e-20 101.3 103 52.4
Aqoxy2G02796 Aquilegia oxysepala HOM05D000175 ORTHO05D004574 1.0e-19 100.9 101 51.5
Actinidia21416 Actinidia chinensis HOM05D000175 ORTHO05D004574 1.3e-19 100.5 101 53.5
BcaB02g07335 Brassica carinata HOM05D000175 ORTHO05D004574 1.3e-19 100.5 95 55.8
FAN08G1436 Fragaria x ananassa HOM05D000175 ORTHO05D004574 1.3e-19 100.5 103 52.4
Sc05g0000550 Simmondsia chinensis HOM05D000175 ORTHO05D004574 1.3e-19 100.5 103 52.4
TPR.G20287 Trifolium pratense HOM05D000175 ORTHO05D004574 1.3e-19 100.5 103 52.4
Atru.chr5.1042 Acer truncatum HOM05D000175 ORTHO05D004574 1.7e-19 100.1 103 53.4
FAN13G0801 Fragaria x ananassa HOM05D000175 ORTHO05D004574 1.7e-19 100.1 103 52.4
Gorai.007G123900 Gossypium raimondii HOM05D000175 ORTHO05D004574 1.7e-19 100.1 103 51.5
MD03G1297000 Malus domestica HOM05D000175 ORTHO05D004574 1.7e-19 100.1 103 52.4
Manes.01G226300 Manihot esculenta HOM05D000175 ORTHO05D004574 1.7e-19 100.1 103 52.4
Oeu008458.1 Olea europaea HOM05D000367 ORTHO05D004574 1.7e-19 100.1 101 53.5
Ah.11g049380 Amaranthus hybridus HOM05D000175 ORTHO05D004574 2.3e-19 99.8 98 54.1
FvH4_5g39520 Fragaria vesca HOM05D000175 ORTHO05D004574 2.3e-19 99.8 103 52.4
FAN18G2485 Fragaria x ananassa HOM05D000175 ORTHO05D004574 2.3e-19 99.8 103 52.4
FAN18G2941 Fragaria x ananassa HOM05D000175 ORTHO05D004574 2.3e-19 99.8 103 52.4
SGA_v2.0_scaffold334G49057 Striga asiatica HOM05D000175 ORTHO05D004574 2.3e-19 99.8 101 52.5
BcaC07g40735 Brassica carinata HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 53.4
A09p54470 Brassica napus HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 53.4
BolC8t51314H Brassica oleracea HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 53.4
BraA09t40860Z Brassica rapa HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 53.4
ClCG09G005240 Citrullus lanatus HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 52.4
Cc01_g21260 Coffea canephora HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 51.5
DCAR_002877 Daucus carota HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 50.5
FAN18G3231 Fragaria x ananassa HOM05D000175 ORTHO05D004574 2.9e-19 99.4 115 49.6
Glyma.19G215100 Glycine max HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 52.4
Medtr7g109340 Medicago truncatula HOM05D000175 ORTHO05D004574 2.9e-19 99.4 103 51.5
BcaC08g45205 Brassica carinata HOM05D000175 ORTHO05D004574 3.8e-19 99.0 103 52.4
A07p26000 Brassica napus HOM05D000175 ORTHO05D004574 3.8e-19 99.0 103 52.4
C06p28290 Brassica napus HOM05D000175 ORTHO05D004574 3.8e-19 99.0 103 52.4
BolC6t37999H Brassica oleracea HOM05D000175 ORTHO05D004574 3.8e-19 99.0 103 52.4
Glyma.03G218300 Glycine max HOM05D000175 ORTHO05D004574 3.8e-19 99.0 103 52.4
Lalb_Chr18g0046791 Lupinus albus HOM05D000175 ORTHO05D004574 3.8e-19 99.0 103 51.5
Thecc.01G310900 Theobroma cacao HOM05D000175 ORTHO05D004574 3.8e-19 99.0 103 52.4
Ciclev10020947m.g Citrus clementina HOM05D000175 ORTHO05D004574 5.0e-19 98.6 103 50.5
ECA248G0565 Erigeron canadensis HOM05D000367 ORTHO05D004574 5.0e-19 98.6 101 51.5
FAN04G1179 Fragaria x ananassa HOM05D000175 ORTHO05D004574 5.0e-19 98.6 103 51.5
HanXRQChr10g0285401 Helianthus annuus HOM05D000367 ORTHO05D004574 5.0e-19 98.6 103 52.4
HanXRQChr11g0329371 Helianthus annuus HOM05D000367 ORTHO05D004574 5.0e-19 98.6 103 51.5
PSO357G0591 Papaver somniferum HOM05D000175 ORTHO05D004574 5.0e-19 98.6 101 50.5
Peaxi162Scf00058g03014 Petunia axillaris HOM05D000175 ORTHO05D004574 5.0e-19 98.6 103 51.5
Potri.014G122600 Populus trichocarpa HOM05D000175 ORTHO05D004574 5.0e-19 98.6 103 51.5
Sp5g00900 Schrenkiella parvula HOM05D000175 ORTHO05D004574 5.0e-19 98.6 103 52.4
Actinidia27608 Actinidia chinensis HOM05D000175 ORTHO05D004574 6.6e-19 98.2 101 51.5
Psat3g020280 Pisum sativum HOM05D000175 ORTHO05D004574 6.6e-19 98.2 103 50.5
RcHm_v2.0_Chr7g0241831 Rosa chinensis HOM05D000175 ORTHO05D004574 6.6e-19 98.2 103 51.5
CANSAT25G3589 Cannabis sativa HOM05D000175 ORTHO05D004574 8.6e-19 97.8 103 51.5
Lj1g0010215 Lotus japonicus HOM05D000175 ORTHO05D004574 8.6e-19 97.8 101 52.5
SGA_v2.0_scaffold376G50267 Striga asiatica HOM05D000175 ORTHO05D004574 8.6e-19 97.8 101 51.5
TWI36G0846 Tripterygium wilfordii HOM05D000175 ORTHO05D004574 8.6e-19 97.8 103 50.5
EL10As5g23502 Beta vulgaris HOM05D000175 ORTHO05D004574 1.1e-18 97.4 103 51.5
CDE09G1308 Ceratophyllum demersum HOM05D000175 ORTHO05D004574 1.1e-18 97.4 101 52.5
Sabra14G0091000 Salix brachista HOM05D000175 ORTHO05D004574 1.1e-18 97.4 103 50.5
BcaC02g10299 Brassica carinata HOM05D000175 ORTHO05D004574 1.5e-18 97.1 103 51.5
C04p30630 Brassica napus HOM05D000175 ORTHO05D004574 1.5e-18 97.1 103 51.5
BolC4t24588H Brassica oleracea HOM05D000175 ORTHO05D004574 1.5e-18 97.1 103 51.5
Migut.D00096 Erythranthe guttata HOM05D000175 ORTHO05D004574 1.5e-18 97.1 101 50.5
arahy.Tifrunner.gnm1.ann1.EL2JAL Arachis hypogaea HOM05D000367 ORTHO05D004574 1.9e-18 96.7 103 50.5
BcaB02g08110 Brassica carinata HOM05D000175 ORTHO05D004574 1.9e-18 96.7 103 51.5
BraA07t30248Z Brassica rapa HOM05D000367 ORTHO05D004574 1.9e-18 96.7 103 51.5
Lsat_1_v5_gn_5_191561 Lactuca sativa HOM05D000367 ORTHO05D004574 1.9e-18 96.7 101 52.5
PSO761G0573 Papaver somniferum HOM05D000175 ORTHO05D004574 1.9e-18 96.7 98 53.1
AT3G62600 Arabidopsis thaliana HOM05D000175 ORTHO05D004574 2.5e-18 96.3 98 53.1
CARHR172870 Cardamine hirsuta HOM05D000175 ORTHO05D004574 2.5e-18 96.3 103 51.5
CsaV3_7G029830 Cucumis sativus L. HOM05D000175 ORTHO05D004574 2.5e-18 96.3 103 50.5
Thhalv10006078m.g Eutrema salsugineum HOM05D000175 ORTHO05D004574 2.5e-18 96.3 98 53.1
Oeu047381.1 Olea europaea HOM05D000175 ORTHO05D004574 2.5e-18 96.3 103 53.4
Os05g0156500 Oryza sativa ssp. japonica HOM05D000175 ORTHO05D004574 2.5e-18 96.3 101 50.5
Rhsim01G0289700 Rhododendron simsii HOM05D000367 ORTHO05D004574 2.5e-18 96.3 52 84.6
Ca_09201_v3 Cicer arietinum L. HOM05D000175 ORTHO05D004574 3.3e-18 95.9 103 50.5
Phvul.001G211800 Phaseolus vulgaris HOM05D000175 ORTHO05D004574 3.3e-18 95.9 103 50.5
Aa31LG10G16420 Aethionema arabicum HOM05D000175 ORTHO05D004574 4.3e-18 95.5 103 50.5
A04p00600 Brassica napus HOM05D000175 ORTHO05D004574 4.3e-18 95.5 103 50.5
BraA04t15780Z Brassica rapa HOM05D000175 ORTHO05D004574 4.3e-18 95.5 103 50.5
Nitab4.5_0000906g0010 Nicotiana tabacum HOM05D000175 ORTHO05D004574 4.3e-18 95.5 103 50.5
Nitab4.5_0001301g0160 Nicotiana tabacum HOM05D000175 ORTHO05D004574 4.3e-18 95.5 103 50.5
PSO210G3769 Papaver somniferum HOM05D000175 ORTHO05D004574 4.3e-18 95.5 98 52.0
AL5G45350 Arabidopsis lyrata HOM05D000175 ORTHO05D004574 5.6e-18 95.1 98 52.0
Sed0022601 Sechium edule HOM05D000175 ORTHO05D004574 7.3e-18 94.7 103 48.5
Carub.0005s2926 Capsella rubella HOM05D000175 ORTHO05D004574 9.5e-18 94.4 98 51.0
Sed0027598 Sechium edule HOM05D000175 ORTHO05D004574 1.2e-17 94.0 103 48.5
arahy.Tifrunner.gnm1.ann1.3B4RP4 Arachis hypogaea HOM05D000367 ORTHO05D004574 1.6e-17 93.6 101 49.5
Nitab4.5_0010861g0010 Nicotiana tabacum HOM05D000175 ORTHO05D004574 2.1e-17 93.2 101 49.5
Cfa005825 Carpinus fangiana HOM05D000175 ORTHO05D004574 2.8e-17 92.8 103 50.5
Ca_30820_v3 Cicer arietinum L. HOM05D000175 ORTHO05D004574 2.8e-17 92.8 101 49.5
DCAR_005773 Daucus carota HOM05D000175 ORTHO05D004574 2.8e-17 92.8 103 47.6
Gohir.A08G118800 Gossypium hirsutum HOM05D000175 ORTHO05D004574 2.8e-17 92.8 103 49.5
Hund09616 Selenicereus undatus HOM05D000175 ORTHO05D004574 2.8e-17 92.8 103 49.5
CAN.G1280.19 Capsicum annuum HOM05D000175 ORTHO05D004574 3.6e-17 92.4 101 47.5
AUR62011835 Chenopodium quinoa HOM05D000175 ORTHO05D004574 3.6e-17 92.4 103 49.5
AUR62024677 Chenopodium quinoa HOM05D000175 ORTHO05D004574 3.6e-17 92.4 103 49.5
PGSC0003DMG400009004 Solanum tuberosum HOM05D000175 ORTHO05D004574 3.6e-17 92.4 103 50.5
TWI18G0212 Tripterygium wilfordii HOM05D000175 ORTHO05D004574 3.6e-17 92.4 103 48.5
Nitab4.5_0011161g0010 Nicotiana tabacum HOM05D000175 ORTHO05D004574 4.7e-17 92.0 101 49.5
Glyma.02G013800 Glycine max HOM05D000175 ORTHO05D004574 6.1e-17 91.7 99 49.5
SEGI_15537 Sequoiadendron giganteum HOM05D000175 ORTHO05D004574 6.1e-17 91.7 98 48.0
THA.LOC104817464 Tarenaya hassleriana HOM05D000175 ORTHO05D004574 6.1e-17 91.7 103 47.6
Gohir.D08G139500 Gossypium hirsutum HOM05D000367 ORTHO05D004574 8.0e-17 91.3 103 48.5
Gorai.004G143600 Gossypium raimondii HOM05D000175 ORTHO05D004574 8.0e-17 91.3 103 48.5
Solyc01g079610.3 Solanum lycopersicum HOM05D000175 ORTHO05D004574 8.0e-17 91.3 103 49.5
Sopen01g031390 Solanum pennellii HOM05D000175 ORTHO05D004574 8.0e-17 91.3 103 49.5
THA.LOC104802195 Tarenaya hassleriana HOM05D000175 ORTHO05D004574 8.0e-17 91.3 103 47.6
Hma1.2p1_1302F.1_g274270 Hydrangea macrophylla HOM05D000367 ORTHO05D004574 1.0e-16 90.9 53 81.1
HPP92_002617 Vanilla planifolia HOM05D000175 ORTHO05D004574 1.8e-16 90.1 101 47.5
HPP92_002678 Vanilla planifolia HOM05D000175 ORTHO05D004574 1.8e-16 90.1 101 47.5
SHI33201 Sapria himalayana HOM05D000175 ORTHO05D004574 2.3e-16 89.7 103 45.6
C08p37360 Brassica napus HOM05D000175 ORTHO05D004574 4.0e-16 89.0 53 81.1
ATR0706G028 Amborella trichopoda HOM05D000175 ORTHO05D004574 5.2e-16 88.6 98 48.0
unitig_85.g27179 Utricularia gibba HOM05D000175 ORTHO05D004574 1.5e-15 87.0 103 47.6
Zm00001eb345630 Zea mays HOM05D000367 ORTHO05D004574 9.8e-15 84.3 101 45.5
BcaC02g10297 Brassica carinata HOM05D000175 ORTHO05D004574 1.1e-13 80.9 53 77.4
C04p30650 Brassica napus HOM05D000175 ORTHO05D004574 1.1e-13 80.9 53 77.4
Mapoly0115s0018 Marchantia polymorpha HOM05D000175 ORTHO05D004574 1.1e-13 80.9 102 43.1
Pp3c12_8210 Physcomitrium patens HOM05D000175 ORTHO05D004574 3.2e-13 79.3 102 43.1
Zm00001eb340880 Zea mays HOM05D000175 ORTHO05D004574 3.0e-11 72.8 97 39.2
CDE02G0301 Ceratophyllum demersum HOM05D000175 ORTHO05D004574 1.5e-10 70.5 84 45.2
Pp3c4_21130 Physcomitrium patens HOM05D000175 ORTHO05D004574 1.5e-10 70.5 101 41.6
unitig_578.g16625 Utricularia gibba HOM05D000367 ORTHO05D421929 4.3e-10 68.9 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.5179 Anthoceros agrestis HOM05D000175 ORTHO05D004574 7.3e-10 68.2 51 60.8
Actinidia12746 Actinidia chinensis HOM05D000367 ORTHO05D004574 9.5e-10 67.8 67 55.2
VMungo1383G3258 Vigna mungo HOM05D001958 ORTHO05D001971 9.5e-10 67.8 82 46.3
SMO165G0006 Selaginella moellendorffii HOM05D000175 ORTHO05D004574 5.2e-08 62.0 98 35.7
CBR_g39261 Chara braunii HOM05D000175 ORTHO05D004574 2.6e-07 59.7 102 34.3
Cre07.g320150 Chlamydomonas reinhardtii HOM05D000175 ORTHO05D004574 4.9e-06 55.5 55 43.6
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 6.4e-06 55.1 47 57.4


User provided reference genes

Program Settings