Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 6.9e-254 880.2 452 100.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 5.6e-195 684.5 457 77.2
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 1.5e-187 659.8 446 75.3
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 2.5e-187 659.1 446 75.8
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 8.9e-185 650.6 446 74.7
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 2.1e-178 629.4 432 73.6
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 6.2e-178 627.9 446 73.1
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.4e-177 626.7 429 75.3
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.1e-177 625.5 451 72.7
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 6.8e-177 624.4 423 74.9
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 2.0e-176 622.9 447 71.4
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.0e-176 622.9 445 72.4
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.0e-176 622.9 448 72.3
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 3.4e-176 622.1 426 76.8
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 4.4e-176 621.7 445 72.1
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.4e-176 621.7 429 74.1
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 9.9e-176 620.5 445 70.6
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 3.8e-175 618.6 433 72.3
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 3.8e-175 618.6 432 73.6
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.9e-174 616.3 436 73.2
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 7.1e-174 614.4 433 72.5
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 3.5e-173 612.1 434 71.4
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.0e-172 610.5 430 71.2
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 1.0e-172 610.5 441 71.0
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.5e-171 606.7 424 73.1
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 3.3e-171 605.5 432 71.5
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 3.3e-171 605.5 432 71.3
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 4.3e-171 605.1 422 74.2
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 5.6e-171 604.7 423 74.5
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 9.6e-171 604.0 433 71.4
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.6e-170 603.2 430 72.8
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.6e-170 603.2 439 71.3
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 3.6e-170 602.1 432 71.1
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 3.6e-170 602.1 424 73.1
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 4.7e-170 601.7 433 71.1
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 6.2e-170 601.3 421 71.5
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 1.1e-169 600.5 432 71.5
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 2.4e-169 599.4 432 70.6
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 4.0e-169 598.6 422 71.6
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 5.2e-169 598.2 442 69.7
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 9.0e-169 597.4 432 70.4
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 9.0e-169 597.4 432 70.6
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.2e-168 597.0 432 70.8
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.5e-168 596.7 435 72.2
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 3.4e-168 595.5 419 71.1
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 5.8e-168 594.7 488 65.4
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 1.3e-167 593.6 429 70.4
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 2.2e-167 592.8 420 71.0
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 4.9e-167 591.7 429 70.2
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 8.4e-167 590.9 421 71.3
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.4e-166 590.1 420 70.2
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 3.2e-166 589.0 434 70.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 7.1e-166 587.8 393 76.3
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 1.2e-165 587.0 421 70.5
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 1.2e-165 587.0 421 70.5
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.6e-165 586.6 446 67.7
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 2.1e-165 586.3 417 73.1
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 6.0e-165 584.7 404 72.5
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.9e-163 579.7 420 68.8
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.6e-160 569.3 414 69.8
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.3e-159 567.0 422 70.1
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.4e-158 563.5 453 66.0
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.0e-157 558.1 409 72.1
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 2.1e-154 549.7 430 66.5
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 5.3e-153 545.0 451 62.1
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 2.6e-152 542.7 421 66.5
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 9.9e-152 540.8 525 56.2
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 4.9e-151 538.5 536 55.6
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.2e-150 535.4 440 63.2
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 5.5e-150 535.0 423 66.4
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 7.4e-147 524.6 390 69.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 2.8e-146 522.7 424 63.9
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 4.8e-146 521.9 438 63.0
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 4.8e-146 521.9 429 65.5
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 8.2e-146 521.2 362 71.5
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 4.0e-145 518.8 367 68.7
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 5.8e-144 515.0 432 64.8
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 1.0e-143 514.2 435 62.3
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.2e-143 513.1 374 71.7
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 2.5e-142 509.6 453 60.7
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 3.2e-142 509.2 395 66.8
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.2e-142 508.8 437 62.9
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 8.7e-140 501.1 434 61.5
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.9e-139 500.0 359 72.4
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.0e-135 487.6 475 57.3
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 6.5e-135 485.0 386 65.8
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 3.0e-132 476.1 443 59.6
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 6.7e-132 474.9 391 66.5
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 7.4e-131 471.5 432 57.9
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 3.4e-128 462.6 340 71.8
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 7.7e-128 461.5 436 57.1
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 5.0e-127 458.8 452 57.1
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 4.2e-126 455.7 400 60.0
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 3.6e-125 452.6 346 68.8
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 7.9e-125 451.4 344 70.1
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 7.4e-123 444.9 295 74.2
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.0e-119 434.5 351 65.0
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 3.8e-119 432.6 376 61.2
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 4.7e-117 425.6 380 59.2
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.1e-115 421.0 337 65.3
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 1.8e-113 413.7 338 63.6
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 1.8e-113 413.7 338 63.6
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.8e-108 397.1 368 56.8
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 2.8e-106 389.8 446 48.9
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.1e-101 373.6 312 66.0
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 3.6e-101 372.9 418 47.4
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 5.7e-99 365.5 252 72.2
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 2.3e-95 353.6 399 48.1
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 2.3e-87 327.0 308 60.1
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 5.8e-83 312.4 353 49.6
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 2.4e-81 307.0 263 59.3
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 2.3e-76 290.4 204 75.5
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.7e-66 256.5 194 72.2
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 5.8e-59 232.6 222 60.4
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.4e-57 228.0 198 59.1
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 9.2e-57 225.3 185 67.0
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.1e-54 218.4 343 42.6
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 5.3e-52 209.5 564 30.0
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 6.0e-48 196.1 368 38.3
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 1.6e-45 188.0 185 54.1
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.9e-41 174.5 307 40.1
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 6.0e-40 169.5 427 32.6
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 5.1e-39 166.4 140 57.1
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 5.6e-38 162.9 120 70.8
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 9.6e-38 162.2 177 52.0
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 2.8e-37 160.6 140 64.3
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 3.7e-37 160.2 162 54.9
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 6.0e-32 142.9 97 79.4
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.8e-31 141.4 104 71.2
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.4e-30 136.0 93 77.4
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.0e-26 125.6 86 68.6
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.0e-26 125.6 99 66.7
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 4.9e-26 123.2 498 27.1
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 7.7e-19 99.4 70 68.6
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.3e-18 98.6 67 73.1
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 7.2e-17 92.8 78 65.4
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 9.4e-17 92.4 67 70.1
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.9e-16 89.4 63 81.0
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 7.9e-16 89.4 63 81.0
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 9.7e-14 82.4 53 67.9
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 9.1e-12 75.9 48 75.0
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 7.7e-11 72.8 57 73.7
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 5.0e-10 70.1 75 58.7
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 7.2e-09 66.2 214 29.4
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 9.4e-09 65.9 55 69.1
GSVIVG01037115001 Vitis vinifera HOM05D004498 ORTHO05D005300 6.7e-07 59.7 49 55.1
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.8e-07 59.3 69 50.7
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 8.8e-07 59.3 69 50.7
AagrBONN_evm.TU.Sc2ySwM_344.4951 Anthoceros agrestis HOM05D004498 ORTHO05D005300 9.7e-06 55.8 89 40.4


User provided reference genes

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