Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.4e-101 372.9 182 100.0
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 8.5e-78 293.9 162 87.7
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 1.7e-70 269.6 168 78.0
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 1.9e-69 266.2 156 80.8
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 7.2e-69 264.2 153 81.7
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 2.1e-68 262.7 150 84.0
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.0e-67 260.4 149 82.6
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 1.8e-67 259.6 152 80.9
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 2.3e-67 259.2 138 87.0
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 6.8e-67 257.7 158 77.2
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.2e-66 256.9 151 81.5
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 1.2e-66 256.9 158 77.2
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 1.5e-66 256.5 155 78.1
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 2.6e-66 255.8 160 76.2
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 9.8e-66 253.8 152 77.6
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 2.2e-65 252.7 161 73.3
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 4.9e-65 251.5 162 75.9
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.1e-64 250.4 146 81.5
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 1.4e-64 250.0 158 75.3
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.4e-64 250.0 150 76.7
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.8e-64 249.6 150 78.0
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 1.8e-64 249.6 136 81.6
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 2.4e-64 249.2 143 79.0
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 4.1e-64 248.4 147 81.0
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.2e-63 246.9 169 68.0
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.6e-63 246.5 144 77.1
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 1.6e-63 246.5 154 74.7
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 1.6e-63 246.5 160 73.1
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 2.0e-63 246.1 135 80.7
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 2.7e-63 245.7 154 70.8
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 4.5e-63 245.0 147 72.8
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 4.5e-63 245.0 138 81.2
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 4.5e-63 245.0 140 82.9
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 7.7e-63 244.2 134 81.3
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 7.7e-63 244.2 144 76.4
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 7.7e-63 244.2 144 76.4
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.0e-62 243.8 155 71.0
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 1.0e-62 243.8 153 74.5
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 1.0e-62 243.8 136 80.9
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 1.3e-62 243.4 162 66.7
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 1.3e-62 243.4 147 75.5
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.3e-62 243.4 147 76.9
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 2.3e-62 242.7 137 81.0
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 2.9e-62 242.3 146 76.7
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 2.9e-62 242.3 151 76.2
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 3.8e-62 241.9 151 70.9
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.8e-62 241.9 136 80.9
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.8e-62 241.9 136 80.9
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 3.8e-62 241.9 157 70.1
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 5.0e-62 241.5 135 80.7
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 5.0e-62 241.5 149 71.1
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 5.0e-62 241.5 149 71.1
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 5.0e-62 241.5 149 71.1
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 5.0e-62 241.5 149 71.1
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 5.0e-62 241.5 149 71.1
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 5.0e-62 241.5 160 70.0
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 5.0e-62 241.5 147 75.5
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 6.6e-62 241.1 147 75.5
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 6.6e-62 241.1 137 80.3
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 6.6e-62 241.1 151 76.2
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 6.6e-62 241.1 161 70.2
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 6.6e-62 241.1 149 75.8
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 6.6e-62 241.1 149 76.5
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 1.5e-61 240.0 149 70.5
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 1.9e-61 239.6 157 70.7
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 1.9e-61 239.6 138 79.7
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.5e-61 239.2 157 72.0
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.5e-61 239.2 141 77.3
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 2.5e-61 239.2 149 74.5
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 3.3e-61 238.8 155 67.7
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 3.3e-61 238.8 151 73.5
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 3.3e-61 238.8 151 73.5
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 3.3e-61 238.8 151 73.5
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 3.3e-61 238.8 152 72.4
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 5.6e-61 238.0 155 70.3
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 5.6e-61 238.0 157 72.0
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 5.6e-61 238.0 155 69.7
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 7.3e-61 237.7 167 67.1
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 7.3e-61 237.7 154 68.8
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 9.5e-61 237.3 157 70.7
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 9.5e-61 237.3 160 67.5
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 9.5e-61 237.3 142 76.8
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 1.2e-60 236.9 169 66.3
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 1.2e-60 236.9 155 70.3
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 1.6e-60 236.5 141 75.9
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.6e-60 236.5 149 72.5
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 2.1e-60 236.1 151 70.2
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.1e-60 236.1 160 66.9
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.1e-60 236.1 137 77.4
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 2.1e-60 236.1 149 73.2
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 2.8e-60 235.7 157 68.2
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 4.7e-60 235.0 165 64.8
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 4.7e-60 235.0 149 70.5
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 6.1e-60 234.6 141 75.9
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 8.0e-60 234.2 154 70.8
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 8.0e-60 234.2 157 74.5
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 1.0e-59 233.8 152 70.4
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 1.8e-59 233.0 152 72.4
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 4.0e-59 231.9 165 64.2
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 5.2e-59 231.5 156 68.6
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 2.0e-58 229.6 142 72.5
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 2.6e-58 229.2 134 75.4
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 3.2e-56 222.2 135 72.6
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.2e-55 220.3 188 59.0
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.3e-54 216.1 188 57.4
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 2.3e-54 216.1 136 67.6
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 3.0e-54 215.7 150 64.0
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 8.6e-54 214.2 154 64.9
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.5e-53 213.4 189 56.6
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 4.3e-53 211.8 172 59.3
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 9.5e-53 210.7 134 69.4
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 1.2e-50 203.8 113 83.2
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.7e-46 189.9 106 80.2
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.9e-45 186.4 150 66.7
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 9.5e-45 184.1 157 55.4
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 1.2e-42 177.2 150 53.3
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 2.6e-42 176.0 149 56.4
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 5.8e-42 174.9 86 98.8
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 7.5e-42 174.5 97 80.4
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.3e-25 120.6 75 73.3
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-22 108.2 83 57.8
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 4.9e-17 92.0 150 36.0
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 1.6e-15 87.0 75 54.7
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 2.3e-14 83.2 133 38.3
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.1e-11 74.3 58 72.4


User provided reference genes

Program Settings