Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 1.8e-158 562.8 329 100.0
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 6.4e-108 394.8 331 71.0
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 2.4e-107 392.9 330 71.2
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 2.1e-106 389.8 334 68.6
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 1.0e-105 387.5 327 72.5
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 1.1e-104 384.0 329 70.2
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 1.5e-104 383.6 327 71.6
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 7.3e-104 381.3 329 64.7
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 9.6e-104 380.9 329 69.0
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 9.6e-104 380.9 333 68.8
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 2.8e-103 379.4 327 63.9
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 1.1e-102 377.5 323 70.3
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 4.0e-102 375.6 327 69.1
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 9.0e-102 374.4 329 68.1
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 1.3e-100 370.5 329 68.1
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 1.7e-100 370.2 322 68.3
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 2.2e-100 369.8 331 70.1
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 2.2e-100 369.8 331 70.4
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 2.2e-100 369.8 331 68.0
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 2.2e-100 369.8 325 66.5
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.1e-99 367.5 326 69.0
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 4.2e-99 365.5 331 67.4
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 7.1e-99 364.8 331 67.4
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 2.7e-98 362.8 326 65.0
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 2.7e-98 362.8 323 67.5
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 4.6e-98 362.1 318 65.7
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 6.0e-98 361.7 329 62.0
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 1.8e-97 360.1 323 67.5
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 1.8e-97 360.1 329 63.5
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 2.3e-97 359.8 325 67.7
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 3.9e-97 359.0 322 65.8
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 5.1e-97 358.6 325 66.5
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 8.7e-97 357.8 322 68.9
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 2.5e-96 356.3 334 62.3
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 5.6e-96 355.1 327 67.0
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 4.8e-95 352.1 331 63.7
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 6.2e-95 351.7 327 62.4
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 6.2e-95 351.7 352 58.2
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 1.1e-94 350.9 327 66.1
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.4e-94 349.7 321 68.8
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 4.0e-94 349.0 336 61.0
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 6.9e-94 348.2 321 69.2
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 6.9e-94 348.2 362 54.7
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 6.9e-94 348.2 319 66.5
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 1.5e-93 347.1 323 66.6
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 2.0e-93 346.7 327 64.8
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 9.9e-93 344.4 324 66.4
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 1.3e-92 344.0 324 65.7
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 2.2e-92 343.2 352 56.8
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 3.8e-92 342.4 327 64.8
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 3.2e-91 339.3 327 64.8
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 5.5e-91 338.6 327 64.5
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 7.1e-91 338.2 329 63.8
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 9.3e-91 337.8 329 64.4
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 9.3e-91 337.8 324 65.4
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 9.3e-91 337.8 326 62.9
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 2.1e-90 336.7 324 64.5
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 1.0e-89 334.3 332 64.2
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 1.3e-89 334.0 333 59.2
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 1.8e-89 333.6 333 62.8
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 2.3e-89 333.2 325 64.0
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 3.0e-89 332.8 329 64.4
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 3.9e-89 332.4 325 64.6
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 8.7e-89 331.3 329 60.5
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 1.1e-88 330.9 326 62.9
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 1.1e-88 330.9 326 62.9
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 1.5e-88 330.5 327 58.7
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 4.3e-88 328.9 328 62.8
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 7.4e-88 328.2 327 64.8
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 1.3e-87 327.4 322 62.4
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 1.6e-87 327.0 324 64.5
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 1.6e-87 327.0 310 65.5
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 2.6e-85 319.7 326 63.8
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 4.5e-85 318.9 323 56.0
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 5.8e-85 318.5 326 63.5
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 5.8e-85 318.5 345 50.4
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 8.4e-84 314.7 326 60.7
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 3.2e-83 312.8 321 61.7
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 4.2e-83 312.4 326 59.5
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 2.3e-81 306.6 299 66.6
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 1.9e-80 303.5 323 59.8
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 1.9e-80 303.5 334 59.9
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 3.3e-80 302.8 325 59.7
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 9.7e-80 301.2 339 55.2
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 2.2e-79 300.1 334 59.6
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 1.4e-78 297.4 321 61.7
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 2.4e-78 296.6 324 61.7
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 2.4e-78 296.6 324 61.7
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 3.1e-78 296.2 323 57.9
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 5.9e-77 292.0 321 58.3
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 1.3e-76 290.8 335 56.7
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 5.0e-76 288.9 324 59.9
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 1.2e-74 284.3 173 77.5
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 6.7e-73 278.5 331 47.7
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 2.7e-66 256.5 311 55.6
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 4.7e-66 255.8 287 58.5
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 1.1e-64 251.1 325 54.8
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 9.7e-64 248.1 173 66.5
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 8.2e-63 245.0 172 64.0
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 2.4e-62 243.4 327 50.8
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 2.6e-61 240.0 250 50.8
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.4e-59 234.2 163 67.5
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 2.5e-59 233.4 174 63.8
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 2.1e-58 230.3 161 67.7
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 4.7e-58 229.2 176 62.5
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 5.2e-57 225.7 169 64.5
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 2.0e-56 223.8 320 46.9
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 5.7e-56 222.2 174 61.5
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 2.6e-53 213.4 198 52.5
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 4.4e-48 196.1 170 54.1
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.1e-46 191.4 170 58.2
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 8.3e-39 165.2 186 47.3
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 3.1e-38 163.3 168 51.8
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 5.9e-37 159.1 216 59.3
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 1.4e-30 137.9 343 38.2
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 1.4e-30 137.9 253 32.0
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 9.2e-30 135.2 77 84.4
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.2e-29 134.8 168 40.5
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 1.7e-28 131.0 99 62.6
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.2e-24 118.2 91 61.5
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 6.4e-23 112.5 253 47.8
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 3.2e-22 110.2 82 65.9
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 1.5e-19 101.3 75 64.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 6.2e-18 95.9 363 27.8
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 3.7e-15 86.7 55 67.3
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 4.9e-15 86.3 55 69.1
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 4.6e-13 79.7 50 72.0
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 6.0e-13 79.3 123 40.7
SGA_v2.0_scaffold44G16637 Striga asiatica HOM05D005795 ORTHO05D007200 1.2e-08 65.1 153 32.7
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 7.5e-08 62.4 60 51.7
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 9.9e-08 62.0 58 50.0
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 1.9e-06 57.8 180 25.6


User provided reference genes

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