Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.6e-41 170.2 85 100.0
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.1e-27 126.3 71 91.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.8e-23 111.7 72 72.2
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 3.7e-23 111.3 72 76.4
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 4.8e-23 110.9 72 77.8
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 6.2e-23 110.5 71 76.1
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 6.2e-23 110.5 72 75.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 6.2e-23 110.5 71 76.1
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.1e-22 109.8 71 74.6
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.4e-22 109.4 72 75.0
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.8e-22 109.0 74 74.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.4e-22 108.6 72 79.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 3.1e-22 108.2 72 73.6
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.0e-22 107.8 74 75.7
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.0e-22 107.8 71 73.2
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 4.0e-22 107.8 71 74.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 4.0e-22 107.8 71 74.6
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 5.3e-22 107.5 71 76.1
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 6.9e-22 107.1 71 74.6
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.9e-22 107.1 71 74.6
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 6.9e-22 107.1 72 73.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 6.9e-22 107.1 74 73.0
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 6.9e-22 107.1 72 73.6
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 6.9e-22 107.1 72 73.6
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 6.9e-22 107.1 71 74.6
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 6.9e-22 107.1 71 73.2
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.5e-21 105.9 71 73.2
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.0e-21 105.5 71 76.1
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.0e-21 105.5 72 70.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.0e-21 105.5 73 71.2
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 2.0e-21 105.5 86 62.8
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.0e-21 105.5 73 74.0
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.0e-21 105.5 74 73.0
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.6e-21 105.1 72 70.8
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.4e-21 104.8 71 71.8
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 5.8e-21 104.0 70 71.4
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 5.8e-21 104.0 74 71.6
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 5.8e-21 104.0 72 70.8
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 5.8e-21 104.0 71 73.2
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 7.6e-21 103.6 71 69.0
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 7.6e-21 103.6 72 68.1
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.0e-20 103.2 72 69.4
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.3e-20 102.8 72 66.7
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.3e-20 102.8 72 66.7
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.3e-20 102.8 71 69.0
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-20 102.4 74 75.7
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 1.7e-20 102.4 72 68.1
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.7e-20 102.4 68 79.4
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 2.2e-20 102.1 71 70.4
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.2e-20 102.1 72 69.4
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 2.9e-20 101.7 71 67.6
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.9e-20 101.7 71 70.4
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 3.8e-20 101.3 72 68.1
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.8e-20 101.3 72 69.4
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.8e-20 101.3 72 69.4
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.8e-20 101.3 72 69.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.8e-20 101.3 75 69.3
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 6.5e-20 100.5 71 69.0
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 8.4e-20 100.1 71 71.8
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-19 99.8 70 72.9
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.1e-19 99.8 71 67.6
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.4e-19 99.4 71 74.6
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.4e-19 99.4 71 74.6
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.4e-19 99.4 72 68.1
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.4e-19 99.4 66 74.2
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.9e-19 99.0 71 73.2
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.5e-19 98.6 66 72.7
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 3.2e-19 98.2 71 71.8
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 4.2e-19 97.8 71 71.8
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.5e-19 97.4 66 74.2
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.5e-19 97.4 68 72.1
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.1e-19 97.1 72 66.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 7.1e-19 97.1 72 68.1
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 7.1e-19 97.1 72 68.1
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 7.1e-19 97.1 72 69.4
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.2e-18 96.3 73 65.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.1e-18 95.5 72 68.1
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 2.1e-18 95.5 72 68.1
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 2.1e-18 95.5 72 68.1
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.1e-18 95.5 72 68.1
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.1e-18 95.5 72 66.7
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.1e-18 95.5 71 71.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 2.7e-18 95.1 78 69.2
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.7e-18 95.1 71 70.4
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.7e-18 95.1 72 65.3
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.7e-18 95.1 72 65.3
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.7e-18 95.1 72 70.8
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 3.5e-18 94.7 72 65.3
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.5e-18 94.7 71 64.8
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 7.9e-18 93.6 71 64.8
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.0e-17 93.2 71 63.4
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.0e-17 93.2 60 78.3
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.3e-17 92.8 71 67.6
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-17 92.4 64 71.9
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-17 92.4 65 70.8
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.8e-17 92.4 65 70.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.3e-17 92.0 73 65.8
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.3e-17 92.0 70 67.1
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 2.3e-17 92.0 71 62.0
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 3.0e-17 91.7 71 63.4
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 3.0e-17 91.7 71 62.0
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 3.0e-17 91.7 71 62.0
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 3.0e-17 91.7 71 62.0
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.9e-17 91.3 71 66.2
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 3.9e-17 91.3 72 65.3
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 5.1e-17 90.9 72 63.9
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 5.1e-17 90.9 73 65.8
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 5.1e-17 90.9 72 66.7
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 6.7e-17 90.5 72 63.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 6.7e-17 90.5 71 60.6
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.7e-17 90.5 68 67.6
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 6.7e-17 90.5 72 65.3
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.7e-17 90.1 71 62.0
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.5e-16 89.4 71 60.6
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.5e-16 89.4 72 66.7
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.9e-16 89.0 74 62.2
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.9e-16 89.0 71 60.6
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.5e-16 88.6 71 67.6
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 2.5e-16 88.6 54 77.8
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.5e-16 88.6 70 61.4
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.5e-16 88.6 72 66.7
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 4.3e-16 87.8 71 63.4
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.3e-15 86.3 71 62.0
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.2e-15 85.5 64 64.1
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 3.7e-15 84.7 73 58.9
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 3.7e-15 84.7 58 75.9
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 4.8e-15 84.3 71 62.0
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.3e-15 84.0 71 60.6
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.4e-14 82.0 71 62.0
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.4e-14 82.0 73 58.9
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 4.1e-14 81.3 71 59.2
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 9.0e-14 80.1 50 78.0
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.5e-13 79.3 73 57.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.3e-12 76.3 45 75.6
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.3e-12 76.3 70 62.9
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.8e-12 74.7 43 81.4
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.8e-12 74.7 71 54.9
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 5.0e-12 74.3 76 48.7
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 6.5e-12 73.9 43 81.4
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 8.5e-12 73.6 57 64.9
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.9e-11 72.4 42 81.0
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.5e-11 70.9 41 80.5
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.6e-10 68.2 52 57.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 6.1e-10 67.4 50 68.0
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 7.9e-10 67.0 41 78.0
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 6.7e-09 63.9 70 54.3
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 1.9e-08 62.4 58 67.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 3.3e-08 61.6 57 56.1
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-07 59.3 35 82.9
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 4.1e-06 54.7 34 73.5


User provided reference genes

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