Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09459 Nelumbo nucifera HOM05D004129 ORTHO05D005039 2.8e-88 328.9 156 100.0
TAR629G3493 Trochodendron aralioides HOM05D004129 ORTHO05D005039 1.4e-55 220.3 166 67.5
Dinv19144 Davidia involucrata HOM05D004129 ORTHO05D005039 3.2e-55 219.2 167 68.3
vmacro10792 Vaccinium macrocarpon HOM05D004129 ORTHO05D005039 4.6e-54 215.3 164 66.5
Actinidia04325 Actinidia chinensis HOM05D004129 ORTHO05D005039 1.7e-53 213.4 168 65.5
Dinv12053 Davidia involucrata HOM05D004129 ORTHO05D005039 1.7e-53 213.4 166 66.3
TAR289G0001 Trochodendron aralioides HOM05D004129 ORTHO05D005039 6.6e-53 211.5 151 68.9
Lj3C852T13 Lonicera japonica HOM05D004129 ORTHO05D005039 8.9e-50 201.1 163 61.3
Lalb_Chr03g0024871 Lupinus albus HOM05D004129 ORTHO05D005039 2.9e-48 196.1 173 60.1
MBI03_g33917_MAGBIO Magnolia biondii HOM05D004129 ORTHO05D005039 4.9e-48 195.3 166 60.8
Rhsim09G0078200 Rhododendron simsii HOM05D004129 ORTHO05D005039 8.3e-48 194.5 164 61.6
arahy.Tifrunner.gnm1.ann1.H8RGTW Arachis hypogaea HOM05D004129 ORTHO05D005039 7.0e-47 191.4 172 59.3
arahy.Tifrunner.gnm1.ann1.RIL69C Arachis hypogaea HOM05D004129 ORTHO05D005039 7.0e-47 191.4 172 59.3
Lsat_1_v5_gn_0_9261 Lactuca sativa HOM05D004129 ORTHO05D005039 1.6e-46 190.3 161 58.4
CANSAT64G2478 Cannabis sativa HOM05D004129 ORTHO05D005039 3.5e-46 189.1 160 64.4
Lalb_Chr19g0139321 Lupinus albus HOM05D004129 ORTHO05D005039 7.8e-46 188.0 175 59.4
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.0e-45 187.6 165 60.0
Prupe.1G345200 Prunus persica HOM05D004129 ORTHO05D005039 1.0e-45 187.6 164 58.5
ClCG11G013250 Citrullus lanatus HOM05D004129 ORTHO05D005039 1.7e-45 186.8 164 58.5
FvH4_4g36720 Fragaria vesca HOM05D004129 ORTHO05D005039 1.7e-45 186.8 162 61.1
FAN07G0638 Fragaria x ananassa HOM05D004129 ORTHO05D005039 1.7e-45 186.8 162 61.7
FAN12G0359 Fragaria x ananassa HOM05D004129 ORTHO05D005039 1.7e-45 186.8 162 61.1
MELO3C011818.2 Cucumis melo HOM05D004129 ORTHO05D005039 2.3e-45 186.4 164 58.5
MD13G1007800 Malus domestica HOM05D004129 ORTHO05D005039 3.0e-45 186.0 163 60.1
FAN17G2102 Fragaria x ananassa HOM05D004129 ORTHO05D005039 3.9e-45 185.7 162 61.7
Sc06g0007840 Simmondsia chinensis HOM05D004129 ORTHO05D005039 3.9e-45 185.7 165 59.4
Potri.010G170300 Populus trichocarpa HOM05D004129 ORTHO05D005039 6.6e-45 184.9 160 60.6
MD16G1000300 Malus domestica HOM05D004129 ORTHO05D005039 8.6e-45 184.5 163 60.1
Sed0014097 Sechium edule HOM05D004129 ORTHO05D005039 1.1e-44 184.1 158 60.1
Eucgr.J00849 Eucalyptus grandis HOM05D004129 ORTHO05D005039 1.9e-44 183.3 166 60.2
CsaV3_5G029760 Cucumis sativus L. HOM05D004129 ORTHO05D005039 2.5e-44 183.0 164 57.3
Potri.008G085000 Populus trichocarpa HOM05D004129 ORTHO05D005039 3.3e-44 182.6 160 60.0
Ciclev10030903m.g Citrus clementina HOM05D004129 ORTHO05D005039 4.3e-44 182.2 168 60.1
TWI74G0501 Tripterygium wilfordii HOM05D004129 ORTHO05D005039 4.3e-44 182.2 169 54.4
TWI53G0870 Tripterygium wilfordii HOM05D004129 ORTHO05D005039 5.6e-44 181.8 169 54.4
GSVIVG01010208001 Vitis vinifera HOM05D004129 ORTHO05D005039 5.6e-44 181.8 164 56.1
Sabra10G0130000 Salix brachista HOM05D004129 ORTHO05D005039 7.3e-44 181.4 160 60.0
Aqoxy3G04279 Aquilegia oxysepala HOM05D004129 ORTHO05D005039 1.2e-43 180.6 101 82.2
DCAR_026918 Daucus carota HOM05D004129 ORTHO05D005039 1.2e-43 180.6 163 54.0
RcHm_v2.0_Chr4g0446431 Rosa chinensis HOM05D004129 ORTHO05D005039 1.6e-43 180.3 159 59.1
TPR.G21557 Trifolium pratense HOM05D004129 ORTHO05D005039 2.1e-43 179.9 170 59.4
Sabra08G0063100 Salix brachista HOM05D004129 ORTHO05D005039 3.6e-43 179.1 160 59.4
HanXRQChr13g0392741 Helianthus annuus HOM05D004129 ORTHO05D005039 4.7e-43 178.7 165 54.5
Nn4g24922 Nelumbo nucifera HOM05D004129 ORTHO05D005039 6.2e-43 178.3 166 60.8
Cpa.g.sc63.5 Carica papaya HOM05D004129 ORTHO05D005039 1.1e-42 177.6 164 57.3
Ca_03034_v3 Cicer arietinum L. HOM05D004129 ORTHO05D005039 1.8e-42 176.8 161 58.4
Phvul.011G031600 Phaseolus vulgaris HOM05D004129 ORTHO05D005039 1.8e-42 176.8 185 53.5
Glyma.12G028200 Glycine max HOM05D004129 ORTHO05D005039 4.0e-42 175.6 177 55.9
Lj3g0016150 Lotus japonicus HOM05D004129 ORTHO05D005039 4.0e-42 175.6 101 82.2
MBI06_g04642_MAGBIO Magnolia biondii HOM05D004129 ORTHO05D005039 4.0e-42 175.6 159 56.0
VMungo1127G0270 Vigna mungo HOM05D004129 ORTHO05D005039 5.2e-42 175.3 102 83.3
EL10Ac9g22919 Beta vulgaris HOM05D004129 ORTHO05D005039 1.2e-41 174.1 166 53.0
Medtr4g074370 Medicago truncatula HOM05D004129 ORTHO05D005039 2.0e-41 173.3 162 59.9
CDE05G3231 Ceratophyllum demersum HOM05D004129 ORTHO05D005039 4.4e-41 172.2 104 76.9
Manes.15G115000 Manihot esculenta HOM05D004129 ORTHO05D005039 4.4e-41 172.2 179 55.3
Thecc.02G311300 Theobroma cacao HOM05D004129 ORTHO05D005039 5.8e-41 171.8 152 62.5
PGR044G1594 Punica granatum HOM05D004129 ORTHO05D005039 7.5e-41 171.4 155 61.3
QL03p043536 Quercus lobata HOM05D004129 ORTHO05D005039 9.8e-41 171.0 103 80.6
CDE05G0311 Ceratophyllum demersum HOM05D004129 ORTHO05D005039 1.3e-40 170.6 104 75.0
ATR0618G227 Amborella trichopoda HOM05D004129 ORTHO05D005039 1.7e-40 170.2 179 50.3
CAN.G194.12 Capsicum annuum HOM05D004129 ORTHO05D005039 1.7e-40 170.2 159 56.6
Duzib251G0497 Durio zibethinus HOM05D004129 ORTHO05D005039 1.7e-40 170.2 152 61.2
Gohir.A13G026200 Gossypium hirsutum HOM05D004129 ORTHO05D005039 1.7e-40 170.2 172 55.2
MSTRG.2047 Avicennia marina HOM05D004129 ORTHO05D005039 2.2e-40 169.9 151 56.3
HanXRQChr06g0175531 Helianthus annuus HOM05D004129 ORTHO05D005039 2.2e-40 169.9 96 81.2
Psat5g190560 Pisum sativum HOM05D004129 ORTHO05D005039 2.9e-40 169.5 136 63.2
AUR62015200 Chenopodium quinoa HOM05D004129 ORTHO05D005039 3.7e-40 169.1 167 53.3
Gorai.013G028000 Gossypium raimondii HOM05D004129 ORTHO05D005039 3.7e-40 169.1 172 55.2
Manes.03G081000 Manihot esculenta HOM05D004129 ORTHO05D005039 3.7e-40 169.1 102 81.4
PGSC0003DMG400031377 Solanum tuberosum HOM05D004129 ORTHO05D005039 3.7e-40 169.1 165 52.7
Duzib268G0017 Durio zibethinus HOM05D004129 ORTHO05D005039 4.9e-40 168.7 160 61.2
Glyma.11G103300 Glycine max HOM05D004129 ORTHO05D005039 4.9e-40 168.7 184 51.1
Aa31LG8G6600 Aethionema arabicum HOM05D004129 ORTHO05D005039 6.4e-40 168.3 160 54.4
CiPaw.06G057400 Carya illinoinensis HOM05D004129 ORTHO05D005039 6.4e-40 168.3 172 54.1
Gohir.D13G024800 Gossypium hirsutum HOM05D004129 ORTHO05D005039 6.4e-40 168.3 172 55.2
COL.COLO4_27668 Corchorus olitorius HOM05D004129 ORTHO05D005039 8.3e-40 167.9 106 78.3
Duzib248G1331 Durio zibethinus HOM05D004129 ORTHO05D005039 8.3e-40 167.9 152 61.2
Gohir.D12G158900 Gossypium hirsutum HOM05D004129 ORTHO05D005039 1.9e-39 166.8 158 60.1
Gorai.008G172000 Gossypium raimondii HOM05D004129 ORTHO05D005039 1.9e-39 166.8 158 60.1
AUR62017663 Chenopodium quinoa HOM05D004129 ORTHO05D005039 2.4e-39 166.4 167 52.7
Oeu013188.2 Olea europaea HOM05D004129 ORTHO05D005039 3.2e-39 166.0 156 58.3
CiPaw.05G166800 Carya illinoinensis HOM05D004129 ORTHO05D005039 4.1e-39 165.6 105 75.2
Atru.chr11.1230 Acer truncatum HOM05D004129 ORTHO05D005039 5.4e-39 165.2 105 78.1
Atru.chr11.1318 Acer truncatum HOM05D004129 ORTHO05D005039 5.4e-39 165.2 105 78.1
AL1G57850 Arabidopsis lyrata HOM05D004129 ORTHO05D005039 7.1e-39 164.9 163 52.8
DCAR_002561 Daucus carota HOM05D004129 ORTHO05D005039 9.2e-39 164.5 101 73.3
Gohir.A12G155800 Gossypium hirsutum HOM05D004129 ORTHO05D005039 9.2e-39 164.5 108 75.0
Solyc04g008620.3 Solanum lycopersicum HOM05D004129 ORTHO05D005039 9.2e-39 164.5 165 52.7
HPP92_002495 Vanilla planifolia HOM05D004129 ORTHO05D005039 1.6e-38 163.7 101 76.2
Ah.01g012960 Amaranthus hybridus HOM05D004129 ORTHO05D005039 2.7e-38 162.9 160 53.8
CARHR040320 Cardamine hirsuta HOM05D004129 ORTHO05D005039 1.7e-37 160.2 105 71.4
Sopen04g003780 Solanum pennellii HOM05D004129 ORTHO05D005039 2.3e-37 159.8 165 51.5
AT3G19830 Arabidopsis thaliana HOM05D004129 ORTHO05D005039 3.0e-37 159.5 171 50.9
Carub.0001s3937 Capsella rubella HOM05D004129 ORTHO05D005039 3.0e-37 159.5 105 71.4
AT1G50260 Arabidopsis thaliana HOM05D004129 ORTHO05D005039 1.1e-36 157.5 105 71.4
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 1.9e-36 156.8 101 72.3
PSO017G6615 Papaver somniferum HOM05D004129 ORTHO05D005039 1.9e-36 156.8 102 74.5
DCAR_023435 Daucus carota HOM05D004129 ORTHO05D005039 2.5e-36 156.4 101 71.3
Sp1g37110 Schrenkiella parvula HOM05D004129 ORTHO05D005039 2.5e-36 156.4 152 55.3
Carub.0003s1971 Capsella rubella HOM05D004129 ORTHO05D005039 3.3e-36 156.0 171 50.3
Ah.01g001650 Amaranthus hybridus HOM05D004129 ORTHO05D005039 4.3e-36 155.6 164 51.2
SalBow2G1340 Salvia bowleyana HOM05D004129 ORTHO05D005039 5.6e-36 155.2 148 56.1
Cc11_g05060 Coffea canephora HOM05D004129 ORTHO05D005039 7.3e-36 154.8 108 71.3
Nitab4.5_0000129g0330 Nicotiana tabacum HOM05D004129 ORTHO05D005039 9.5e-36 154.5 169 48.5
DCAR_023438 Daucus carota HOM05D004129 ORTHO05D005039 2.8e-35 152.9 99 70.7
Zm00001eb190700 Zea mays HOM05D004129 ORTHO05D005039 2.8e-35 152.9 103 71.8
Nitab4.5_0010895g0010 Nicotiana tabacum HOM05D004129 ORTHO05D005039 3.6e-35 152.5 170 48.2
Peaxi162Scf00329g00816 Petunia axillaris HOM05D004129 ORTHO05D005039 3.6e-35 152.5 159 52.2
Lsat_1_v5_gn_8_33460 Lactuca sativa HOM05D004129 ORTHO05D005039 4.7e-35 152.1 101 67.3
Sp3g17840 Schrenkiella parvula HOM05D004129 ORTHO05D005039 8.1e-35 151.4 105 70.5
AL3G33340 Arabidopsis lyrata HOM05D004129 ORTHO05D005039 1.1e-34 151.0 172 49.4
Thhalv10020191m.g Eutrema salsugineum HOM05D004129 ORTHO05D005039 1.1e-34 151.0 102 72.5
CARHR095350 Cardamine hirsuta HOM05D004129 ORTHO05D005039 3.1e-34 149.4 171 49.1
Oeu063830.2 Olea europaea HOM05D004129 ORTHO05D005039 4.0e-34 149.1 97 72.2
BraA05t21812Z Brassica rapa HOM05D004129 ORTHO05D005039 9.9e-33 144.4 153 50.3
unitig_26.g10582 Utricularia gibba HOM05D004129 ORTHO05D005039 2.2e-32 143.3 144 53.5
BolC5t33206H Brassica oleracea HOM05D004129 ORTHO05D005039 2.9e-32 142.9 152 51.3
C05p44800 Brassica napus HOM05D004129 ORTHO05D005039 3.8e-32 142.5 101 69.3
A05p29290 Brassica napus HOM05D004129 ORTHO05D005039 4.9e-32 142.1 152 50.7
SGA_v2.0_scaffold114G31802 Striga asiatica HOM05D004129 ORTHO05D005039 4.9e-32 142.1 101 73.3
BcaB06g26052 Brassica carinata HOM05D004129 ORTHO05D005039 3.2e-31 139.4 101 67.3
BcaC05g28401 Brassica carinata HOM05D004129 ORTHO05D005039 7.1e-31 138.3 101 66.3
Migut.E00709 Erythranthe guttata HOM05D004129 ORTHO05D005039 4.6e-30 135.6 102 61.8
Psat5g190480 Pisum sativum HOM05D004129 ORTHO05D005039 1.5e-28 130.6 135 52.6
unitig_22.g6366 Utricularia gibba HOM05D004129 ORTHO05D005039 3.3e-28 129.4 149 49.7
ECA233G0693 Erigeron canadensis HOM05D004129 ORTHO05D005039 1.2e-27 127.5 80 72.5
CDE04G0459 Ceratophyllum demersum HOM05D004129 ORTHO05D005039 6.6e-21 105.1 74 67.6
ECA246G4798 Erigeron canadensis HOM05D004129 ORTHO05D005039 5.3e-18 95.5 49 85.7
HPP92_002539 Vanilla planifolia HOM05D004129 ORTHO05D005039 5.3e-18 95.5 49 87.8
Psat5g195680 Pisum sativum HOM05D004129 ORTHO05D005039 1.8e-13 80.5 93 50.5
SMO358G0042 Selaginella moellendorffii HOM05D004129 ORTHO05D005039 7.4e-12 75.1 47 66.0
AagrBONN_evm.TU.Sc2ySwM_228.3305 Anthoceros agrestis HOM05D004129 ORTHO05D005039 6.2e-11 72.0 120 32.5
Os02g0829200 Oryza sativa ssp. japonica HOM05D004129 ORTHO05D005039 2.4e-10 70.1 37 86.5
Mapoly0004s0137 Marchantia polymorpha HOM05D004129 ORTHO05D005039 2.6e-09 66.6 121 31.4
CBR_g19924 Chara braunii HOM05D004129 ORTHO05D005039 2.7e-06 56.6 37 67.6
Mapoly0095s0004 Marchantia polymorpha HOM05D004129 ORTHO05D005039 2.7e-06 56.6 97 36.1


User provided reference genes

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