Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09457 Nelumbo nucifera HOM05D000198 ORTHO05D004339 4.3e-09 63.2 32 100.0
Nn8g39831 Nelumbo nucifera HOM05D000198 ORTHO05D004339 1.3e-08 61.6 32 96.9
Nn2g12327 Nelumbo nucifera HOM05D000198 ORTHO05D004339 2.8e-08 60.5 32 93.8
THA.LOC104803567 Tarenaya hassleriana HOM05D000198 ORTHO05D004339 2.8e-08 60.5 32 93.8
Cfa013071 Carpinus fangiana HOM05D000198 ORTHO05D004339 6.2e-08 59.3 32 87.5
Haze_21429 Corylus avellana HOM05D000198 ORTHO05D004339 6.2e-08 59.3 32 87.5
Os08g0440800 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D004339 6.2e-08 59.3 32 87.5
Zm00001eb179810 Zea mays HOM05D000198 ORTHO05D004339 6.2e-08 59.3 32 87.5
THA.LOC104803898 Tarenaya hassleriana HOM05D000198 ORTHO05D004339 8.1e-08 58.9 32 87.5
GSVIVG01023590001 Vitis vinifera HOM05D000198 ORTHO05D004339 8.1e-08 58.9 32 84.4
Migut.J01334 Erythranthe guttata HOM05D000198 ORTHO05D004339 1.1e-07 58.5 32 84.4
Eucgr.C02594 Eucalyptus grandis HOM05D000198 ORTHO05D004339 1.1e-07 58.5 32 87.5
Lalb_Chr13g0300931 Lupinus albus HOM05D000198 ORTHO05D004339 1.1e-07 58.5 32 84.4
Aa31LG7G12540 Aethionema arabicum HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
AL4G14600 Arabidopsis lyrata HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
AT2G24270 Arabidopsis thaliana HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
MSTRG.6131 Avicennia marina HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
BcaC02g08484 Brassica carinata HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
A04p18560 Brassica napus HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
A09p56370 Brassica napus HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
C04p53810 Brassica napus HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
C08p39350 Brassica napus HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
BolC4t26936H Brassica oleracea HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
BolC8t51508H Brassica oleracea HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
BraA04t17466Z Brassica rapa HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
BraA09t41032Z Brassica rapa HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
Carub.0004s0360 Capsella rubella HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
CARHR117830 Cardamine hirsuta HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
Cpa.g.sc46.131 Carica papaya HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Ciclev10008091m.g Citrus clementina HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
Dinv42875 Davidia involucrata HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Dinv43225 Davidia involucrata HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Duzib168G0515 Durio zibethinus HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Thhalv10000267m.g Eutrema salsugineum HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
Gohir.A05G051800 Gossypium hirsutum HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Gohir.A07G026600 Gossypium hirsutum HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Gohir.D05G053300 Gossypium hirsutum HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Gohir.D07G030500 Gossypium hirsutum HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Gorai.001G031700 Gossypium raimondii HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Gorai.009G055100 Gossypium raimondii HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
HanXRQChr03g0064801 Helianthus annuus HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
HanXRQChr03g0084911 Helianthus annuus HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Hma1.2p1_0222F.1_g093350 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Hma1.2p1_2658F.1_g326370 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Oeu021259.1 Olea europaea HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Potri.006G186800 Populus trichocarpa HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Rhsim03G0256500 Rhododendron simsii HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
Rhsim07G0163900 Rhododendron simsii HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Rhsim07G0164000 Rhododendron simsii HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Rhsim07G0164200 Rhododendron simsii HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Sp4g03260 Schrenkiella parvula HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 87.5
Sc06g0000390 Simmondsia chinensis HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
vmacro06088 Vaccinium macrocarpon HOM05D000198 ORTHO05D004339 1.4e-07 58.2 32 84.4
Actinidia14125 Actinidia chinensis HOM05D000198 ORTHO05D004339 1.8e-07 57.8 32 81.2
Ciclev10008100m.g Citrus clementina HOM05D000198 ORTHO05D004339 1.8e-07 57.8 32 81.2
DCAR_019381 Daucus carota HOM05D000198 ORTHO05D004339 1.8e-07 57.8 32 81.2
Potri.018G020600 Populus trichocarpa HOM05D000198 ORTHO05D004339 1.8e-07 57.8 32 81.2
Glyma.02G202500 Glycine max HOM05D000198 ORTHO05D004339 2.4e-07 57.4 32 81.2
Glyma.17G075300 Glycine max HOM05D000198 ORTHO05D004339 2.4e-07 57.4 32 81.2
Lj4g0028164 Lotus japonicus HOM05D000198 ORTHO05D004339 2.4e-07 57.4 32 81.2
Phvul.003G157200 Phaseolus vulgaris HOM05D000198 ORTHO05D004339 2.4e-07 57.4 32 81.2
SalBow1G4943 Salvia bowleyana HOM05D000198 ORTHO05D004339 2.4e-07 57.4 32 81.2
unitig_748.g7190 Utricularia gibba HOM05D000198 ORTHO05D004339 2.4e-07 57.4 32 81.2
VMungo1215G1018 Vigna mungo HOM05D000198 ORTHO05D004339 2.4e-07 57.4 32 81.2
arahy.Tifrunner.gnm1.ann1.5CRU8P Arachis hypogaea HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 78.1
arahy.Tifrunner.gnm1.ann1.U9DM18 Arachis hypogaea HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 78.1
CSS0037981 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
CSS0043957 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
CAN.G1424.2 Capsicum annuum HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
AUR62012469 Chenopodium quinoa HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 78.1
AUR62031595 Chenopodium quinoa HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 78.1
COL.COLO4_18782 Corchorus olitorius HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
Lj5g0008535 Lotus japonicus HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
Medtr4g131180 Medicago truncatula HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 78.1
SMO141G0018 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
Hund19593 Selenicereus undatus HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 78.1
SEGI_16293 Sequoiadendron giganteum HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
TPR.G39225 Trifolium pratense HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 78.1
TAR625G1014 Trochodendron aralioides HOM05D000198 ORTHO05D004339 3.1e-07 57.0 32 81.2
Aqoxy7G03449 Aquilegia oxysepala HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 81.2
ClCG02G017120 Citrullus lanatus HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 81.2
CsaV3_2G003650 Cucumis sativus L. HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 81.2
ECA240G1143 Erigeron canadensis HOM05D000198 ORTHO05D004339 4.0e-07 56.6 31 87.1
Glyma.17G218200 Glycine max HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
Gohir.A05G058500 Gossypium hirsutum HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
Gohir.D05G060600 Gossypium hirsutum HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
Gorai.009G061700 Gossypium raimondii HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
Hma1.2p1_0059F.1_g032605 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
Hma1.2p1_0059F.1_g032610 Hydrangea macrophylla HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
MBI15_g07759_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 81.2
Medtr1g014320 Medicago truncatula HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
Psat6g027400 Pisum sativum HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
PGR102G2988 Punica granatum HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 81.2
Sed0021265 Sechium edule HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 81.2
Sed0026764 Sechium edule HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 81.2
Thecc.09G017000 Theobroma cacao HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
TPR.G38833 Trifolium pratense HOM05D000198 ORTHO05D004339 4.0e-07 56.6 32 78.1
AagrBONN_evm.TU.Sc2ySwM_117.1579 Anthoceros agrestis HOM05D000198 ORTHO05D004339 5.3e-07 56.2 31 87.1
BcaC07g40944 Brassica carinata HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 84.4
CANSAT11G0600 Cannabis sativa HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Cfa020844 Carpinus fangiana HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
CiPaw.15G174700 Carya illinoinensis HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
CiPaw.16G114600 Carya illinoinensis HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Lalb_Chr07g0179771 Lupinus albus HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Manes.16G128400 Manihot esculenta HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Nitab4.5_0003802g0020 Nicotiana tabacum HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Nitab4.5_0009510g0020 Nicotiana tabacum HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Potri.018G109700 Populus trichocarpa HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 81.2
QL02p092772 Quercus lobata HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Sabra18G0023000 Salix brachista HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Sabra18G0092600 Salix brachista HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 81.2
Solyc07g005390.3 Solanum lycopersicum HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Sopen07g001390 Solanum pennellii HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
PGSC0003DMG400011132 Solanum tuberosum HOM05D000198 ORTHO05D004339 5.3e-07 56.2 32 78.1
Ah.10g035520 Amaranthus hybridus HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
Aqoxy7G03450 Aquilegia oxysepala HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 81.2
Ca_21114_v3 Cicer arietinum L. HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 78.1
ECA240G0766 Erigeron canadensis HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 84.4
FvH4_1g01130 Fragaria vesca HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
FAN19G1357 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
FAN23G1908 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
FAN26G2631 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
FAN28G0506 Fragaria x ananassa HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
MD02G1009300 Malus domestica HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
MD15G1154800 Malus domestica HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
PSO017G3016 Papaver somniferum HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 84.4
PSO170G1981 Papaver somniferum HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 84.4
Prupe.7G260700 Prunus persica HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
RcHm_v2.0_Chr2g0085921 Rosa chinensis HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 75.0
Thecc.09G033100 Theobroma cacao HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 78.1
TWI34G1206 Tripterygium wilfordii HOM05D000198 ORTHO05D004339 6.9e-07 55.8 32 78.1
Atru.chr7.65 Acer truncatum HOM05D000198 ORTHO05D004339 9.0e-07 55.5 32 78.1
Duzib168G0913 Durio zibethinus HOM05D000198 ORTHO05D004339 9.0e-07 55.5 32 78.1
SMO367G1188 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 9.0e-07 55.5 32 81.2
CDE05G0647 Ceratophyllum demersum HOM05D000198 ORTHO05D004339 1.2e-06 55.1 31 80.6
Haze_19229 Corylus avellana HOM05D000198 ORTHO05D004339 1.2e-06 55.1 32 78.1
SMO358G0131 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 1.2e-06 55.1 32 81.2
SMO358G0461 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 1.2e-06 55.1 31 83.9
vmacro05130 Vaccinium macrocarpon HOM05D000198 ORTHO05D004339 1.2e-06 55.1 32 81.2
HPP92_027319 Vanilla planifolia HOM05D000198 ORTHO05D004339 1.2e-06 55.1 31 80.6
Cc06_g15190 Coffea canephora HOM05D000198 ORTHO05D004339 1.5e-06 54.7 32 78.1
Lj7A456G16 Lonicera japonica HOM05D000198 ORTHO05D004339 1.5e-06 54.7 32 78.1
Mapoly0004s0248 Marchantia polymorpha HOM05D000198 ORTHO05D004339 1.5e-06 54.7 30 86.7
TWI34G0274 Tripterygium wilfordii HOM05D000198 ORTHO05D004339 1.5e-06 54.7 32 81.2
arahy.Tifrunner.gnm1.ann1.U399DB Arachis hypogaea HOM05D000198 ORTHO05D004339 2.0e-06 54.3 32 75.0
arahy.Tifrunner.gnm1.ann1.UG6CYA Arachis hypogaea HOM05D000198 ORTHO05D004339 2.0e-06 54.3 32 75.0
Duzib150G1423 Durio zibethinus HOM05D000198 ORTHO05D004339 2.0e-06 54.3 32 75.0
Phvul.001G045700 Phaseolus vulgaris HOM05D000198 ORTHO05D004339 2.6e-06 53.9 31 77.4
Peaxi162Scf00347g01016 Petunia axillaris HOM05D000198 ORTHO05D004339 3.4e-06 53.5 32 71.9
Pp3c17_250 Physcomitrium patens HOM05D000198 ORTHO05D004339 3.4e-06 53.5 30 83.3
EL10Ac2g04127 Beta vulgaris HOM05D000198 ORTHO05D004339 4.5e-06 53.1 31 77.4
Pp3c20_15680 Physcomitrium patens HOM05D000198 ORTHO05D004339 5.8e-06 52.8 31 80.6
SMO361G0108 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 5.8e-06 52.8 31 74.2
GSVIVG01035891001 Vitis vinifera HOM05D000198 ORTHO05D004339 5.8e-06 52.8 32 75.0
Pp3c23_8060 Physcomitrium patens HOM05D000198 ORTHO05D004339 7.6e-06 52.4 30 83.3
Pp3c23_8061 Physcomitrium patens HOM05D000198 ORTHO05D004339 7.6e-06 52.4 30 83.3
Actinidia23549 Actinidia chinensis HOM05D000198 ORTHO05D004339 9.9e-06 52.0 32 71.9
SMO364G0858 Selaginella moellendorffii HOM05D000198 ORTHO05D004339 9.9e-06 52.0 31 74.2


User provided reference genes

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