Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09400 Nelumbo nucifera HOM05D007553 ORTHO05D009123 1.3e-95 353.2 194 100.0
TAR365G1148 Trochodendron aralioides HOM05D007553 ORTHO05D009123 3.1e-25 119.4 128 67.2
Nn7g37423 Nelumbo nucifera HOM05D007553 ORTHO05D009123 1.2e-18 97.4 102 64.7
Manes.01G009500 Manihot esculenta HOM05D007553 ORTHO05D009123 1.5e-16 90.5 138 45.7
QL10p064915 Quercus lobata HOM05D007553 ORTHO05D009123 2.2e-15 86.7 142 48.6
Atru.chr3.1958 Acer truncatum HOM05D007553 ORTHO05D009123 2.9e-15 86.3 131 50.4
Ciclev10022861m.g Citrus clementina HOM05D007553 ORTHO05D009123 1.4e-14 84.0 130 51.5
Cpa.g.sc9.240 Carica papaya HOM05D007553 ORTHO05D009123 3.5e-13 79.3 135 46.7
TWI15G0237 Tripterygium wilfordii HOM05D007553 ORTHO05D009123 6.0e-13 78.6 151 42.4
PGR042G0659 Punica granatum HOM05D007553 ORTHO05D009123 1.3e-12 77.4 83 61.4
THA.LOC104802351 Tarenaya hassleriana HOM05D007553 ORTHO05D009123 1.7e-12 77.0 127 48.0
Sc13g0008070 Simmondsia chinensis HOM05D007553 ORTHO05D009123 3.3e-11 72.8 134 44.0
Zm00001eb112430 Zea mays HOM05D007553 ORTHO05D009123 7.3e-11 71.6 97 46.4
MSTRG.24545 Avicennia marina HOM05D007553 ORTHO05D009123 4.8e-10 68.9 141 44.7
Migut.N03014 Erythranthe guttata HOM05D007553 ORTHO05D009123 4.8e-10 68.9 63 66.7
Thhalv10001780m.g Eutrema salsugineum HOM05D007553 ORTHO05D009123 4.8e-10 68.9 129 45.7
FAN23G1740 Fragaria x ananassa HOM05D007553 ORTHO05D009123 4.8e-10 68.9 129 45.0
Thecc.05G000600 Theobroma cacao HOM05D007553 ORTHO05D009123 1.1e-09 67.8 130 44.6
Ah.07g203320 Amaranthus hybridus HOM05D007553 ORTHO05D009123 1.4e-09 67.4 135 43.7
CARHR139250 Cardamine hirsuta HOM05D007553 ORTHO05D009123 1.4e-09 67.4 99 52.5
RcHm_v2.0_Chr2g0084361 Rosa chinensis HOM05D007553 ORTHO05D009123 1.4e-09 67.4 139 44.6
Sp4g26160 Schrenkiella parvula HOM05D007553 ORTHO05D009123 3.1e-09 66.2 132 43.2
CiPaw.02G125600 Carya illinoinensis HOM05D007553 ORTHO05D009123 4.0e-09 65.9 142 45.1
THA.LOC104804341 Tarenaya hassleriana HOM05D007553 ORTHO05D009123 5.3e-09 65.5 79 62.0
AL4G42960 Arabidopsis lyrata HOM05D007553 ORTHO05D009123 6.9e-09 65.1 120 47.5
AT2G44080 Arabidopsis thaliana HOM05D007553 ORTHO05D009123 6.9e-09 65.1 99 52.5
A05p04200 Brassica napus HOM05D007553 ORTHO05D009123 9.0e-09 64.7 99 51.5
BraA05t19405Z Brassica rapa HOM05D007553 ORTHO05D009123 9.0e-09 64.7 99 51.5
AUR62002498 Chenopodium quinoa HOM05D007553 ORTHO05D009123 1.2e-08 64.3 82 58.5
BcaC02g12342 Brassica carinata HOM05D007553 ORTHO05D009123 2.0e-08 63.5 87 57.5
C04p04960 Brassica napus HOM05D007553 ORTHO05D009123 2.0e-08 63.5 87 57.5
BolC4t22127H Brassica oleracea HOM05D007553 ORTHO05D009123 2.0e-08 63.5 87 57.5
MD02G1000700 Malus domestica HOM05D007553 ORTHO05D009123 2.6e-08 63.2 87 56.3
BcaC07g40396 Brassica carinata HOM05D007553 ORTHO05D009123 4.5e-08 62.4 91 50.5
BcaB02g08922 Brassica carinata HOM05D007553 ORTHO05D009123 5.8e-08 62.0 71 66.2
SHI01179 Sapria himalayana HOM05D007553 ORTHO05D009123 5.8e-08 62.0 63 66.7
EL10Ac3g06183 Beta vulgaris HOM05D007553 ORTHO05D009123 9.9e-08 61.2 136 41.2
Cfa008533 Carpinus fangiana HOM05D007553 ORTHO05D009123 2.2e-07 60.1 144 43.8
AT3G59900 Arabidopsis thaliana HOM05D007553 ORTHO05D009123 2.9e-07 59.7 80 53.8
Potri.017G001400 Populus trichocarpa HOM05D007553 ORTHO05D009123 2.9e-07 59.7 137 38.7
TWI15G1216 Tripterygium wilfordii HOM05D007553 ORTHO05D009123 2.9e-07 59.7 150 36.7
A09p52250 Brassica napus HOM05D007553 ORTHO05D009123 3.8e-07 59.3 77 51.9
BraA09t40654Z Brassica rapa HOM05D007553 ORTHO05D009123 3.8e-07 59.3 77 51.9
Sc19g0002450 Simmondsia chinensis HOM05D007553 ORTHO05D009123 3.8e-07 59.3 86 47.7
AL5G42060 Arabidopsis lyrata HOM05D007553 ORTHO05D009123 4.9e-07 58.9 109 43.1
BolC3t15289H Brassica oleracea HOM05D007553 ORTHO05D009123 6.4e-07 58.5 79 53.2
C06p26460 Brassica napus HOM05D007553 ORTHO05D009123 1.1e-06 57.8 76 52.6
BcaC01g05187 Brassica carinata HOM05D007553 ORTHO05D009123 1.4e-06 57.4 64 59.4
A03p24670 Brassica napus HOM05D007553 ORTHO05D009123 1.4e-06 57.4 64 59.4
C03p29410 Brassica napus HOM05D007553 ORTHO05D009123 1.4e-06 57.4 64 59.4
CARHR170230 Cardamine hirsuta HOM05D007553 ORTHO05D009123 1.4e-06 57.4 80 52.5
A07p24890 Brassica napus HOM05D007553 ORTHO05D009123 1.9e-06 57.0 76 50.0
Manes.05G208400 Manihot esculenta HOM05D007553 ORTHO05D009123 1.9e-06 57.0 91 52.7
BcaC07g40546 Brassica carinata HOM05D007553 ORTHO05D009123 2.4e-06 56.6 65 53.8
BolC8t51089H Brassica oleracea HOM05D007553 ORTHO05D009123 2.4e-06 56.6 65 53.8
Potri.007G146401 Populus trichocarpa HOM05D007553 ORTHO05D009123 2.4e-06 56.6 134 42.5
Aqoxy3G03896 Aquilegia oxysepala HOM05D007553 ORTHO05D009123 3.2e-06 56.2 93 57.0
BraA03t11673Z Brassica rapa HOM05D007553 ORTHO05D009123 5.4e-06 55.5 53 67.9
BcaB01g03340 Brassica carinata HOM05D007553 ORTHO05D009123 7.1e-06 55.1 77 54.5
BcaB01g03341 Brassica carinata HOM05D007553 ORTHO05D009123 7.1e-06 55.1 77 54.5
Os01g0888800 Oryza sativa ssp. japonica HOM05D038911 ORTHO05D009123 9.3e-06 54.7 118 38.1


User provided reference genes

Program Settings