Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09381 Nelumbo nucifera HOM05D002093 ORTHO05D003877 5.6e-77 290.8 142 100.0
Nn1g01222 Nelumbo nucifera HOM05D002093 ORTHO05D003877 5.0e-17 91.7 50 84.0
CiPaw.02G008200 Carya illinoinensis HOM05D002093 ORTHO05D003877 1.2e-10 70.5 114 41.2
Cc07_g06000 Coffea canephora HOM05D002093 ORTHO05D003877 2.7e-10 69.3 36 83.3
Oeu018957.1 Olea europaea HOM05D002093 ORTHO05D003877 3.5e-10 68.9 36 83.3
MSTRG.3425 Avicennia marina HOM05D002093 ORTHO05D003877 4.5e-10 68.6 98 45.9
Solyc02g090870.1 Solanum lycopersicum HOM05D002093 ORTHO05D003877 4.5e-10 68.6 36 80.6
Sopen02g035520 Solanum pennellii HOM05D002093 ORTHO05D003877 4.5e-10 68.6 36 80.6
PGSC0003DMG400004041 Solanum tuberosum HOM05D002093 ORTHO05D003877 4.5e-10 68.6 36 80.6
CSS0045673 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 5.9e-10 68.2 115 40.9
PSO541G0340 Papaver somniferum HOM05D002093 ORTHO05D003877 5.9e-10 68.2 131 35.9
PSO675G7228 Papaver somniferum HOM05D002093 ORTHO05D003877 5.9e-10 68.2 125 36.0
SGA_v2.0_scaffold15G07304 Striga asiatica HOM05D002093 ORTHO05D003877 5.9e-10 68.2 36 80.6
Aqoxy6G01309 Aquilegia oxysepala HOM05D002093 ORTHO05D003877 7.8e-10 67.8 131 38.9
MSTRG.2884 Avicennia marina HOM05D002093 ORTHO05D003877 1.0e-09 67.4 98 44.9
CAN.G660.8 Capsicum annuum HOM05D002093 ORTHO05D003877 1.0e-09 67.4 36 77.8
arahy.Tifrunner.gnm1.ann1.31X1J3 Arachis hypogaea HOM05D002093 ORTHO05D003877 1.3e-09 67.0 114 41.2
arahy.Tifrunner.gnm1.ann1.KYX91V Arachis hypogaea HOM05D002093 ORTHO05D003877 1.3e-09 67.0 114 41.2
Gohir.A12G070900 Gossypium hirsutum HOM05D002093 ORTHO05D003877 1.3e-09 67.0 114 41.2
Gohir.D12G069400 Gossypium hirsutum HOM05D002093 ORTHO05D003877 1.3e-09 67.0 114 41.2
Gorai.008G076000 Gossypium raimondii HOM05D002093 ORTHO05D003877 1.3e-09 67.0 114 41.2
Lj7A69T48 Lonicera japonica HOM05D002093 ORTHO05D003877 1.3e-09 67.0 52 61.5
Oeu031954.1 Olea europaea HOM05D002093 ORTHO05D003877 1.3e-09 67.0 115 40.9
COL.COLO4_11417 Corchorus olitorius HOM05D002093 ORTHO05D003877 1.7e-09 66.6 114 41.2
Haze_15397 Corylus avellana HOM05D002093 ORTHO05D003877 1.7e-09 66.6 114 40.4
Migut.H00432 Erythranthe guttata HOM05D002093 ORTHO05D003877 1.7e-09 66.6 98 44.9
arahy.Tifrunner.gnm1.ann1.6LZ9WW Arachis hypogaea HOM05D002093 ORTHO05D003877 2.3e-09 66.2 37 70.3
arahy.Tifrunner.gnm1.ann1.R7X80S Arachis hypogaea HOM05D002093 ORTHO05D003877 2.3e-09 66.2 37 70.3
FvH4_1g16070 Fragaria vesca HOM05D002093 ORTHO05D003877 2.3e-09 66.2 36 77.8
FAN19G2882 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.3e-09 66.2 36 77.8
FAN23G2320 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.3e-09 66.2 36 77.8
FAN26G2318 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.3e-09 66.2 36 77.8
FAN28G1260 Fragaria x ananassa HOM05D002093 ORTHO05D003877 2.3e-09 66.2 36 77.8
Prupe.7G133200 Prunus persica HOM05D002093 ORTHO05D003877 2.3e-09 66.2 36 77.8
RcHm_v2.0_Chr2g0105691 Rosa chinensis HOM05D002093 ORTHO05D003877 2.3e-09 66.2 36 77.8
EL10Ac6g15743 Beta vulgaris HOM05D002093 ORTHO05D003877 2.9e-09 65.9 36 77.8
AUR62001927 Chenopodium quinoa HOM05D002093 ORTHO05D003877 2.9e-09 65.9 36 77.8
Dinv39847 Davidia involucrata HOM05D002093 ORTHO05D003877 2.9e-09 65.9 115 41.7
MD15G1284400 Malus domestica HOM05D002093 ORTHO05D003877 2.9e-09 65.9 102 42.2
MSTRG.15388 Avicennia marina HOM05D002093 ORTHO05D003877 3.8e-09 65.5 98 43.9
Cfa004024 Carpinus fangiana HOM05D002093 ORTHO05D003877 3.8e-09 65.5 114 39.5
AUR62003883 Chenopodium quinoa HOM05D002093 ORTHO05D003877 3.8e-09 65.5 35 80.0
ClCG01G016830 Citrullus lanatus HOM05D002093 ORTHO05D003877 3.8e-09 65.5 36 80.6
MELO3C000152.2 Cucumis melo HOM05D002093 ORTHO05D003877 3.8e-09 65.5 36 80.6
CsaV3_6G043270 Cucumis sativus L. HOM05D002093 ORTHO05D003877 3.8e-09 65.5 36 80.6
Gohir.A11G192500 Gossypium hirsutum HOM05D002093 ORTHO05D003877 3.8e-09 65.5 120 40.8
Gohir.D11G199200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 3.8e-09 65.5 120 40.8
Gorai.007G213400 Gossypium raimondii HOM05D002093 ORTHO05D003877 3.8e-09 65.5 120 40.8
TAR381G1348 Trochodendron aralioides HOM05D002093 ORTHO05D003877 3.8e-09 65.5 133 39.1
Hma1.2p1_1705F.1_g298390 Hydrangea macrophylla HOM05D002093 ORTHO05D003877 5.0e-09 65.1 115 40.9
MD02G1172200 Malus domestica HOM05D002093 ORTHO05D003877 5.0e-09 65.1 102 41.2
Psat0s1281g0040 Pisum sativum HOM05D002093 ORTHO05D003877 5.0e-09 65.1 120 38.3
Thecc.01G056400 Theobroma cacao HOM05D002093 ORTHO05D003877 5.0e-09 65.1 113 40.7
Ah.02g124300 Amaranthus hybridus HOM05D002093 ORTHO05D003877 6.6e-09 64.7 36 75.0
HanXRQChr09g0263831 Helianthus annuus HOM05D002093 ORTHO05D003877 6.6e-09 64.7 123 38.2
Lalb_Chr16g0378551 Lupinus albus HOM05D002093 ORTHO05D003877 6.6e-09 64.7 36 77.8
Peaxi162Scf00450g00035 Petunia axillaris HOM05D002093 ORTHO05D003877 6.6e-09 64.7 36 77.8
QL06p041362 Quercus lobata HOM05D002093 ORTHO05D003877 6.6e-09 64.7 114 40.4
Sed0009898 Sechium edule HOM05D002093 ORTHO05D003877 6.6e-09 64.7 36 77.8
Ca_22163_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 8.6e-09 64.3 97 43.3
Lj4g0019433 Lotus japonicus HOM05D002093 ORTHO05D003877 8.6e-09 64.3 115 39.1
Manes.12G106900 Manihot esculenta HOM05D002093 ORTHO05D003877 8.6e-09 64.3 114 40.4
GSVIVG01022129001 Vitis vinifera HOM05D002093 ORTHO05D003877 8.6e-09 64.3 114 40.4
Duzib147G0327 Durio zibethinus HOM05D002093 ORTHO05D003877 1.1e-08 63.9 114 40.4
PSO210G1107 Papaver somniferum HOM05D002093 ORTHO05D003877 1.1e-08 63.9 34 76.5
unitig_899.g14941 Utricularia gibba HOM05D002093 ORTHO05D003877 1.1e-08 63.9 135 38.5
CiPaw.01G018000 Carya illinoinensis HOM05D002093 ORTHO05D003877 1.5e-08 63.5 114 37.7
Ciclev10025785m.g Citrus clementina HOM05D002093 ORTHO05D003877 1.5e-08 63.5 115 40.0
Nitab4.5_0002440g0020 Nicotiana tabacum HOM05D002093 ORTHO05D003877 1.5e-08 63.5 36 77.8
Psat2g167200 Pisum sativum HOM05D002093 ORTHO05D003877 1.5e-08 63.5 114 39.5
Manes.13G124200 Manihot esculenta HOM05D002093 ORTHO05D003877 1.9e-08 63.2 114 39.5
PGR102G1838 Punica granatum HOM05D002093 ORTHO05D003877 1.9e-08 63.2 36 75.0
Atru.chr3.326 Acer truncatum HOM05D002093 ORTHO05D003877 2.5e-08 62.8 115 39.1
AT5G67020 Arabidopsis thaliana HOM05D002093 ORTHO05D003877 2.5e-08 62.8 36 75.0
Cpa.g.sc55.147 Carica papaya HOM05D002093 ORTHO05D003877 2.5e-08 62.8 36 72.2
Duzib187G1344 Durio zibethinus HOM05D002093 ORTHO05D003877 2.5e-08 62.8 114 39.5
Gohir.D03G023700 Gossypium hirsutum HOM05D002093 ORTHO05D003877 2.5e-08 62.8 114 39.5
Gorai.003G025200 Gossypium raimondii HOM05D002093 ORTHO05D003877 2.5e-08 62.8 114 39.5
Oeu031526.1 Olea europaea HOM05D002093 ORTHO05D003877 2.5e-08 62.8 36 77.8
TAR628G1162 Trochodendron aralioides HOM05D002093 ORTHO05D003877 3.3e-08 62.4 115 38.3
AL5G30460 Arabidopsis lyrata HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 72.2
BcaC06g34778 Brassica carinata HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 75.0
BcaC06g34779 Brassica carinata HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 75.0
C07p24720 Brassica napus HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 75.0
C07p24730 Brassica napus HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 75.0
BolC7t42993H Brassica oleracea HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 75.0
CSS0014053 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 4.3e-08 62.0 129 37.2
CARHR159800 Cardamine hirsuta HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 72.2
Gohir.A02G157200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 4.3e-08 62.0 114 39.5
Nitab4.5_0002016g0100 Nicotiana tabacum HOM05D002093 ORTHO05D003877 4.3e-08 62.0 115 39.1
Sc03g0001590 Simmondsia chinensis HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 75.0
THA.LOC104827141 Tarenaya hassleriana HOM05D002093 ORTHO05D003877 4.3e-08 62.0 36 72.2
Actinidia36495 Actinidia chinensis HOM05D002093 ORTHO05D003877 5.6e-08 61.6 132 39.4
Migut.K00766 Erythranthe guttata HOM05D002093 ORTHO05D003877 5.6e-08 61.6 98 40.8
Eucgr.I00924 Eucalyptus grandis HOM05D002093 ORTHO05D003877 5.6e-08 61.6 36 72.2
Lalb_Chr09g0323191 Lupinus albus HOM05D002093 ORTHO05D003877 5.6e-08 61.6 97 41.2
Potri.005G138300 Populus trichocarpa HOM05D002093 ORTHO05D003877 5.6e-08 61.6 36 75.0
TWI09G1584 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 5.6e-08 61.6 114 39.5
CARHR280640 Cardamine hirsuta HOM05D002093 ORTHO05D003877 7.3e-08 61.2 36 72.2
MELO3C020873.2 Cucumis melo HOM05D002093 ORTHO05D003877 7.3e-08 61.2 36 75.0
CsaV3_2G016640 Cucumis sativus L. HOM05D002093 ORTHO05D003877 7.3e-08 61.2 36 75.0
Lj2g0008573 Lotus japonicus HOM05D002093 ORTHO05D003877 7.3e-08 61.2 114 38.6
TAR625G0453 Trochodendron aralioides HOM05D002093 ORTHO05D003877 7.3e-08 61.2 115 41.7
CANSAT01G0818 Cannabis sativa HOM05D002093 ORTHO05D003877 9.5e-08 60.8 114 38.6
Oeu031527.1 Olea europaea HOM05D002093 ORTHO05D003877 9.5e-08 60.8 52 59.6
AL8G44340 Arabidopsis lyrata HOM05D002093 ORTHO05D003877 1.2e-07 60.5 35 71.4
ClCG02G012510 Citrullus lanatus HOM05D002093 ORTHO05D003877 1.2e-07 60.5 36 72.2
Glyma.01G186100 Glycine max HOM05D002093 ORTHO05D003877 1.2e-07 60.5 114 38.6
Glyma.11G055900 Glycine max HOM05D002093 ORTHO05D003877 1.2e-07 60.5 114 38.6
Lsat_1_v5_gn_4_166281 Lactuca sativa HOM05D002093 ORTHO05D003877 1.2e-07 60.5 115 36.5
TPR.G19073 Trifolium pratense HOM05D002093 ORTHO05D003877 1.2e-07 60.5 102 40.2
VMungo1215G2131 Vigna mungo HOM05D002093 ORTHO05D003877 1.2e-07 60.5 114 38.6
Carub.0008s2748 Capsella rubella HOM05D002093 ORTHO05D003877 1.6e-07 60.1 36 72.2
PSO170G6176 Papaver somniferum HOM05D002093 ORTHO05D003877 1.6e-07 60.1 34 73.5
THA.LOC104821255 Tarenaya hassleriana HOM05D002093 ORTHO05D003877 2.1e-07 59.7 53 52.8
TPR.G30703 Trifolium pratense HOM05D002093 ORTHO05D003877 2.1e-07 59.7 114 37.7
ATR0009G029 Amborella trichopoda HOM05D002093 ORTHO05D003877 2.8e-07 59.3 115 36.5
AT3G50340 Arabidopsis thaliana HOM05D002093 ORTHO05D003877 2.8e-07 59.3 97 40.2
MSTRG.23745 Avicennia marina HOM05D002093 ORTHO05D003877 2.8e-07 59.3 98 41.8
BcaC09g50022 Brassica carinata HOM05D002093 ORTHO05D003877 2.8e-07 59.3 36 69.4
C01p29900 Brassica napus HOM05D002093 ORTHO05D003877 2.8e-07 59.3 36 69.4
BolC1t02932H Brassica oleracea HOM05D002093 ORTHO05D003877 2.8e-07 59.3 36 69.4
Carub.0005s1665 Capsella rubella HOM05D002093 ORTHO05D003877 2.8e-07 59.3 97 40.2
Medtr5g017410 Medicago truncatula HOM05D002093 ORTHO05D003877 2.8e-07 59.3 114 37.7
TWI73G0884 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 2.8e-07 59.3 114 38.6
ECA232G3993 Erigeron canadensis HOM05D002093 ORTHO05D003877 3.6e-07 58.9 115 37.4
Oeu031528.1 Olea europaea HOM05D002093 ORTHO05D003877 3.6e-07 58.9 36 75.0
Potri.007G044200 Populus trichocarpa HOM05D002093 ORTHO05D003877 3.6e-07 58.9 97 42.3
Rhsim10G0117500 Rhododendron simsii HOM05D002093 ORTHO05D003877 3.6e-07 58.9 36 69.4
Sed0000549 Sechium edule HOM05D002093 ORTHO05D003877 3.6e-07 58.9 36 75.0
A07p16910 Brassica napus HOM05D002093 ORTHO05D003877 4.7e-07 58.5 120 37.5
Phvul.002G018800 Phaseolus vulgaris HOM05D002093 ORTHO05D003877 4.7e-07 58.5 114 37.7
Sp2g29650 Schrenkiella parvula HOM05D002093 ORTHO05D003877 4.7e-07 58.5 146 34.9
Sp5g11850 Schrenkiella parvula HOM05D002093 ORTHO05D003877 4.7e-07 58.5 36 66.7
BcaB05g23211 Brassica carinata HOM05D002093 ORTHO05D003877 6.1e-07 58.2 36 66.7
BcaC07g39493 Brassica carinata HOM05D002093 ORTHO05D003877 6.1e-07 58.2 36 66.7
A09p43350 Brassica napus HOM05D002093 ORTHO05D003877 6.1e-07 58.2 36 66.7
C08p25380 Brassica napus HOM05D002093 ORTHO05D003877 6.1e-07 58.2 36 66.7
BolC8t50159H Brassica oleracea HOM05D002093 ORTHO05D003877 6.1e-07 58.2 36 66.7
BraA09t39804Z Brassica rapa HOM05D002093 ORTHO05D003877 6.1e-07 58.2 36 66.7
Ca_24769_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 6.1e-07 58.2 114 36.8
Sed0011926 Sechium edule HOM05D002093 ORTHO05D003877 8.0e-07 57.8 97 41.2
TWI53G0455 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 8.0e-07 57.8 36 69.4
Actinidia16482 Actinidia chinensis HOM05D002093 ORTHO05D003877 1.0e-06 57.4 98 40.8
A01p24190 Brassica napus HOM05D002093 ORTHO05D003877 1.0e-06 57.4 36 63.9
BraA01t02331Z Brassica rapa HOM05D002093 ORTHO05D003877 1.0e-06 57.4 36 63.9
Zm00001eb176690 Zea mays HOM05D002093 ORTHO05D003877 1.0e-06 57.4 117 34.2
PGR004G1935 Punica granatum HOM05D002093 ORTHO05D003877 1.4e-06 57.0 115 36.5
Sabra07G0038900 Salix brachista HOM05D002093 ORTHO05D003877 1.8e-06 56.6 97 41.2
unitig_899.g14664 Utricularia gibba HOM05D002093 ORTHO05D003877 1.8e-06 56.6 94 40.4
Sabra05G0112200 Salix brachista HOM05D002093 ORTHO05D003877 2.3e-06 56.2 36 66.7
BraA07t29417Z Brassica rapa HOM05D002093 ORTHO05D003877 3.0e-06 55.8 36 69.4
DCAR_025734 Daucus carota HOM05D002093 ORTHO05D003877 3.0e-06 55.8 36 66.7
Zm00001eb038030 Zea mays HOM05D002093 ORTHO05D003877 3.0e-06 55.8 111 32.4
CDE08G0082 Ceratophyllum demersum HOM05D002093 ORTHO05D003877 4.0e-06 55.5 96 37.5
HanXRQChr15g0490521 Helianthus annuus HOM05D002093 ORTHO05D003877 4.0e-06 55.5 115 35.7
MBI03_g13471_MAGBIO Magnolia biondii HOM05D002093 ORTHO05D003877 4.0e-06 55.5 94 42.6
BcaB01g00624 Brassica carinata HOM05D002093 ORTHO05D003877 5.2e-06 55.1 36 63.9
Thhalv10010424m.g Eutrema salsugineum HOM05D002093 ORTHO05D003877 5.2e-06 55.1 36 63.9
vmacro05338 Vaccinium macrocarpon HOM05D002093 ORTHO05D003877 6.8e-06 54.7 114 36.8
Rhsim08G0100300 Rhododendron simsii HOM05D002093 ORTHO05D003877 8.9e-06 54.3 125 35.2


User provided reference genes

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