Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 1.6e-227 792.3 384 100.0
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 4.3e-148 528.5 366 71.0
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 9.7e-148 527.3 344 73.0
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 9.0e-146 520.8 357 68.3
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 2.6e-145 519.2 342 71.6
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 1.3e-144 516.9 362 68.0
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 3.2e-143 512.3 341 72.7
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 3.2e-143 512.3 360 69.7
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 1.0e-141 507.3 339 69.3
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 1.0e-141 507.3 373 66.8
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 5.1e-141 505.0 356 68.0
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 2.0e-140 503.1 361 68.4
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 5.7e-140 501.5 360 66.4
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 2.8e-139 499.2 336 70.5
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.4e-138 496.9 337 70.0
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 3.1e-138 495.7 359 66.0
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 1.0e-136 490.7 372 66.7
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 5.0e-136 488.4 366 63.9
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 6.5e-136 488.0 361 64.5
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 1.9e-135 486.5 371 63.3
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 1.9e-135 486.5 355 65.4
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 2.5e-135 486.1 354 65.3
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 4.2e-135 485.3 334 68.6
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 5.5e-135 485.0 355 65.9
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 1.2e-134 483.8 355 65.1
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 1.2e-134 483.8 338 68.0
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 3.6e-134 482.3 369 63.7
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 3.6e-134 482.3 377 63.4
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 5.1e-133 478.4 366 62.8
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 6.7e-133 478.0 359 63.8
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 6.7e-133 478.0 349 66.5
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 8.8e-133 477.6 365 64.1
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 2.6e-132 476.1 339 65.5
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 3.3e-132 475.7 364 64.0
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 3.3e-132 475.7 364 64.0
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 3.3e-132 475.7 363 64.2
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 3.3e-132 475.7 342 65.8
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 5.7e-132 474.9 398 59.3
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 9.7e-132 474.2 398 59.0
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 9.7e-132 474.2 379 60.9
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 9.7e-132 474.2 352 65.1
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 8.2e-131 471.1 434 57.1
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.1e-130 470.7 349 65.6
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.1e-130 470.7 343 65.9
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.1e-130 468.8 359 63.0
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 5.3e-130 468.4 338 66.0
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 2.0e-129 466.5 347 63.1
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 4.5e-129 465.3 361 60.9
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 7.7e-129 464.5 379 60.9
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 7.7e-129 464.5 319 68.3
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 1.3e-128 463.8 371 62.0
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 1.7e-128 463.4 360 61.4
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 2.9e-128 462.6 379 61.5
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 3.8e-128 462.2 366 59.3
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 5.0e-128 461.8 354 62.4
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 1.1e-127 460.7 347 63.1
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 1.9e-127 459.9 379 61.7
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 2.5e-127 459.5 360 62.2
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 4.2e-127 458.8 380 59.5
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 7.2e-127 458.0 360 61.7
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 1.2e-126 457.2 360 62.2
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 2.7e-126 456.1 360 61.9
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 3.6e-126 455.7 377 59.9
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 4.7e-126 455.3 358 62.0
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 8.0e-126 454.5 358 60.9
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 3.0e-125 452.6 359 62.4
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 1.1e-124 450.7 358 61.5
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 7.5e-124 448.0 371 59.0
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.7e-123 446.8 335 64.5
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 1.7e-123 446.8 335 64.5
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 1.4e-122 443.7 342 62.0
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 7.0e-122 441.4 357 60.2
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 7.7e-121 438.0 366 59.6
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 7.7e-121 438.0 340 61.2
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 4.2e-119 432.2 299 70.9
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 9.4e-119 431.0 372 57.3
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 2.7e-118 429.5 357 59.1
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 2.0e-116 423.3 384 56.2
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 9.8e-116 421.0 358 58.4
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 9.1e-114 414.5 295 67.1
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 2.0e-113 413.3 295 66.4
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.0e-112 411.0 339 60.5
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 1.1e-111 407.5 317 61.8
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 5.5e-111 405.2 370 55.1
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 1.6e-110 403.7 297 65.0
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 4.0e-109 399.1 294 64.3
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 5.7e-108 395.2 373 53.9
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 7.0e-106 388.3 372 54.8
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 5.9e-105 385.2 361 54.8
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 3.7e-99 365.9 295 61.7
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 4.1e-98 362.5 356 53.1
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 3.9e-96 355.9 263 65.4
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.7e-89 333.2 285 58.2
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 7.1e-82 308.5 188 81.4
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 8.4e-67 258.5 157 71.3
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 6.2e-62 242.3 145 72.4
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 1.3e-59 234.6 294 45.6
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 3.9e-56 223.0 142 69.0
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 5.6e-55 219.2 141 70.2
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 5.3e-53 212.6 368 37.8
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 3.4e-52 209.9 286 43.7
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 5.8e-44 182.6 317 36.3
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 8.7e-40 168.7 107 72.0
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 1.8e-37 161.0 357 32.5
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 7.4e-31 139.0 107 62.6
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 3.7e-30 136.7 501 25.0
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 3.6e-17 93.6 114 44.7
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 1.0e-16 92.0 46 82.6
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 2.0e-15 87.8 45 80.0
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 4.8e-14 83.2 46 78.3
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 8.2e-14 82.4 84 51.2
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 5.3e-13 79.7 103 46.6
Cfa009704 Carpinus fangiana HOM05D004419 ORTHO05D005480 1.2e-12 78.6 287 25.8
Haze_23057 Corylus avellana HOM05D004419 ORTHO05D005480 1.6e-12 78.2 287 25.8
Haze_23052 Corylus avellana HOM05D004419 ORTHO05D005480 2.6e-12 77.4 287 25.8
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 2.6e-12 77.4 192 33.9
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 5.9e-12 76.3 287 25.1
ECA233G0260 Erigeron canadensis HOM05D004419 ORTHO05D005480 1.3e-11 75.1 289 25.3
TWI60G0085 Tripterygium wilfordii HOM05D004419 ORTHO05D005480 1.3e-11 75.1 287 25.4
Duzib168G0032 Durio zibethinus HOM05D004419 ORTHO05D005480 3.8e-11 73.6 287 24.7
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 6.5e-11 72.8 93 45.2
BcaC05g28276 Brassica carinata HOM05D004419 ORTHO05D005480 2.5e-10 70.9 308 23.7
C05p43260 Brassica napus HOM05D004419 ORTHO05D005480 2.5e-10 70.9 308 23.7
BolC5t33056H Brassica oleracea HOM05D004419 ORTHO05D005480 2.5e-10 70.9 308 23.7
TAR623G0092 Trochodendron aralioides HOM05D004419 ORTHO05D005480 2.5e-10 70.9 289 25.6
Lsat_1_v5_gn_6_50061 Lactuca sativa HOM05D004419 ORTHO05D005480 3.2e-10 70.5 289 23.5
A05p27970 Brassica napus HOM05D004419 ORTHO05D005480 7.2e-10 69.3 307 23.5
Migut.D00562 Erythranthe guttata HOM05D004419 ORTHO05D005480 9.4e-10 68.9 310 24.5
Mapoly0036s0149 Marchantia polymorpha HOM05D004419 ORTHO05D005480 9.4e-10 68.9 313 22.7
HPP92_017970 Vanilla planifolia HOM05D004419 ORTHO05D005480 9.4e-10 68.9 292 24.0
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 1.2e-09 68.6 310 22.9
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 1.2e-09 68.6 74 50.0
THA.LOC104816908 Tarenaya hassleriana HOM05D004419 ORTHO05D005480 1.2e-09 68.6 290 24.8
Gohir.A06G108900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.6e-09 68.2 287 24.0
Atru.chr3.2519_Atru.chr3.2520 Acer truncatum HOM05D004419 ORTHO05D005480 2.1e-09 67.8 288 24.7
BraA05t21680Z Brassica rapa HOM05D004419 ORTHO05D005480 2.1e-09 67.8 307 23.5
Potri.001G016200 Populus trichocarpa HOM05D004419 ORTHO05D005480 2.1e-09 67.8 287 24.0
Sp3g18830 Schrenkiella parvula HOM05D004419 ORTHO05D005480 2.1e-09 67.8 309 24.6
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 2.7e-09 67.4 291 23.4
Dinv36300 Davidia involucrata HOM05D004419 ORTHO05D005480 3.6e-09 67.0 310 23.9
Thecc.09G224700 Theobroma cacao HOM05D004419 ORTHO05D005480 3.6e-09 67.0 291 24.1
AT3G20810 Arabidopsis thaliana HOM05D004419 ORTHO05D005480 4.7e-09 66.6 308 23.4
Cpa.g.sc84.102 Carica papaya HOM05D004419 ORTHO05D005480 4.7e-09 66.6 294 22.1
Prupe.6G015700 Prunus persica HOM05D004419 ORTHO05D005480 8.0e-09 65.9 288 24.0
Gohir.D06G112900 Gossypium hirsutum HOM05D004419 ORTHO05D005480 1.0e-08 65.5 287 25.8
GSVIVG01025322001 Vitis vinifera HOM05D004419 ORTHO05D005480 1.0e-08 65.5 290 25.5
MD03G1020700 Malus domestica HOM05D004419 ORTHO05D005480 1.4e-08 65.1 287 23.0
Hma1.2p1_0143F.1_g064490 Hydrangea macrophylla HOM05D004419 ORTHO05D005480 1.8e-08 64.7 292 23.3
CANSAT54G1224 Cannabis sativa HOM05D004419 ORTHO05D005480 3.0e-08 63.9 294 25.5
Os09g0489200 Oryza sativa ssp. japonica HOM05D004419 ORTHO05D005480 5.2e-08 63.2 287 23.7
vmacro12711 Vaccinium macrocarpon HOM05D004419 ORTHO05D005480 8.8e-08 62.4 294 24.1
HanXRQChr02g0056491 Helianthus annuus HOM05D004419 ORTHO05D005480 1.5e-07 61.6 287 22.0
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 2.6e-07 60.8 140 27.1
AL3G34730 Arabidopsis lyrata HOM05D004419 ORTHO05D005480 3.3e-07 60.5 325 22.5
Cc01_g04260 Coffea canephora HOM05D004419 ORTHO05D005480 3.3e-07 60.5 287 22.6
Nitab4.5_0003250g0020 Nicotiana tabacum HOM05D004419 ORTHO05D005480 3.3e-07 60.5 294 22.8
Oeu024454.3 Olea europaea HOM05D004419 ORTHO05D005480 2.2e-06 57.8 319 23.2
Rhsim11G0036300 Rhododendron simsii HOM05D000007 ORTHO05D000039 3.7e-06 57.0 32 68.8
SMO364G0845 Selaginella moellendorffii HOM05D004419 ORTHO05D005480 4.8e-06 56.6 306 21.2
CBR_g68529 Chara braunii HOM05D004419 ORTHO05D005480 8.2e-06 55.8 285 23.5


User provided reference genes

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