Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.6e-178 627.5 311 100.0
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.0e-163 578.6 311 90.7
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.0e-155 552.0 311 87.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 7.8e-140 500.7 328 76.5
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.3e-139 499.2 313 79.2
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 6.6e-139 497.7 322 77.3
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.3e-138 495.4 329 74.5
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 7.3e-138 494.2 349 72.5
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 9.6e-138 493.8 325 75.7
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 4.8e-137 491.5 324 73.5
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.1e-137 490.7 316 77.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 1.4e-136 490.0 327 73.7
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.6e-135 485.7 326 74.8
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.8e-135 484.6 287 84.3
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 9.9e-135 483.8 329 72.9
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 9.9e-135 483.8 329 72.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.3e-134 483.4 340 72.1
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.9e-133 479.6 315 75.6
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.4e-133 479.2 328 73.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 9.3e-133 477.2 325 73.2
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.2e-132 476.9 340 71.5
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.6e-132 476.5 334 73.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.1e-132 476.1 336 73.2
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 6.0e-132 474.6 325 72.9
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 3.9e-131 471.9 327 71.9
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 4.8e-129 464.9 333 71.8
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.2e-129 464.5 338 72.2
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.4e-128 463.4 316 73.4
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.4e-128 463.4 387 62.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.8e-128 463.0 323 71.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.8e-128 463.0 313 73.5
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.8e-128 463.0 333 71.5
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 2.4e-128 462.6 327 70.6
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 4.0e-128 461.8 323 70.9
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.3e-128 461.5 327 70.9
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.9e-128 461.1 311 73.0
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.5e-127 459.9 334 71.0
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 2.0e-127 459.5 388 63.7
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.4e-127 458.8 331 70.7
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.0e-126 457.2 312 74.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.3e-126 456.8 320 71.6
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 4.9e-126 454.9 324 71.3
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 4.9e-126 454.9 323 70.3
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.1e-125 453.8 340 68.5
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 5.5e-125 451.4 390 61.5
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 2.7e-124 449.1 313 73.8
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 2.7e-124 449.1 392 63.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 6.0e-124 448.0 339 67.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 7.9e-124 447.6 316 70.9
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 7.9e-124 447.6 327 69.4
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 5.1e-123 444.9 329 67.5
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 7.4e-122 441.0 331 68.0
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 7.4e-122 441.0 337 67.4
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 2.1e-121 439.5 376 61.4
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.1e-121 439.5 298 73.2
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 2.8e-121 439.1 314 72.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.7e-121 438.7 330 67.9
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 8.2e-121 437.6 298 72.8
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 8.2e-121 437.6 384 61.2
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.4e-120 436.8 328 68.3
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 2.4e-120 436.0 331 66.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 5.3e-120 434.9 353 65.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-119 433.3 361 64.3
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.6e-119 432.6 298 72.1
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 5.8e-119 431.4 333 66.1
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.8e-119 431.4 257 79.8
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.9e-118 429.1 347 64.3
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.9e-118 429.1 383 61.4
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 6.5e-118 427.9 334 66.2
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.9e-117 426.4 356 62.6
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 3.2e-117 425.6 350 65.4
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 7.1e-117 424.5 330 67.6
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.0e-115 419.1 335 66.0
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 5.1e-115 418.3 335 64.8
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 6.7e-115 417.9 316 67.4
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 5.7e-114 414.8 338 63.6
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 9.7e-114 414.1 305 69.2
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.1e-112 410.6 328 65.2
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.1e-112 409.1 285 70.9
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 5.3e-112 408.3 330 64.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.0e-111 406.4 224 86.2
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.0e-110 404.1 334 62.0
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 4.2e-109 398.7 301 66.4
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.1e-108 396.4 272 72.4
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 8.8e-107 391.0 273 72.9
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.5e-106 389.4 341 61.9
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 8.2e-105 384.4 307 62.9
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 5.3e-104 381.7 321 60.4
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 4.5e-103 378.6 387 53.5
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.4e-101 373.6 322 59.0
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.5e-101 372.9 319 59.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 7.2e-101 371.3 320 58.8
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 9.4e-101 370.9 214 80.4
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.6e-100 370.2 207 82.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.5e-98 363.6 260 66.9
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 4.4e-98 362.1 317 59.6
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 9.7e-98 360.9 318 56.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.2e-97 359.8 320 57.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.2e-97 359.8 293 62.8
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.9e-93 346.7 340 55.0
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-92 344.0 311 55.0
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 4.7e-92 342.0 325 54.8
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.0e-91 340.9 386 52.3
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.0e-91 339.3 293 61.1
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 4.4e-90 335.5 321 53.6
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 4.4e-90 335.5 321 53.6
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.8e-89 332.8 321 53.3
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.6e-87 326.2 319 54.5
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 4.5e-87 325.5 320 51.6
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.2e-86 323.2 321 52.0
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.5e-85 319.7 321 52.0
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.0e-83 314.3 321 51.1
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.3e-83 313.2 174 85.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 3.0e-83 312.8 321 51.1
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 5.2e-83 312.0 245 67.3
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 6.8e-83 311.6 317 51.1
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.3e-73 280.8 297 48.8
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 4.9e-73 278.9 248 58.5
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.0e-70 271.2 171 73.1
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 6.6e-70 268.5 167 74.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 4.6e-63 245.7 355 41.7
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 4.6e-63 245.7 221 55.2
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.5e-61 240.7 153 72.5
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.2e-60 237.7 150 77.3
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.1e-56 224.6 173 69.9
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.3e-45 186.0 113 74.3
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.4e-42 176.4 119 70.6
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 5.4e-40 169.1 313 36.1
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.7e-36 156.0 100 75.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.2e-32 142.9 80 80.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 3.5e-31 139.8 101 64.4
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 3.1e-27 126.7 120 63.3
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.0e-26 124.0 57 98.2
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.4e-26 123.2 122 61.5
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 4.2e-16 89.7 67 64.2
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.2e-16 89.7 86 57.0
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.0e-14 85.1 44 88.6
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.7e-14 82.4 48 75.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.5e-13 80.5 55 76.4
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 4.0e-11 73.2 376 21.5
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 8.7e-06 55.5 74 39.2


User provided reference genes

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