Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09307 Nelumbo nucifera HOM05D007456 ORTHO05D009411 1.7e-86 324.3 532 100.0
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 4.0e-27 127.1 148 52.0
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 6.9e-27 126.3 148 52.0
Dinv11972 Davidia involucrata HOM05D007456 ORTHO05D009411 7.9e-23 112.8 143 50.3
FvH4_7g33530 Fragaria vesca HOM05D007456 ORTHO05D009411 5.8e-18 96.7 65 66.2
Aqoxy3G00913 Aquilegia oxysepala HOM05D007456 ORTHO05D009411 2.9e-17 94.4 113 45.1
CAN.G128.20 Capsicum annuum HOM05D007456 ORTHO05D009411 2.9e-17 94.4 94 54.3
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 1.1e-16 92.4 83 62.7
FvH4_7g33490 Fragaria vesca HOM05D007456 ORTHO05D009411 2.5e-16 91.3 65 66.2
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 3.2e-16 90.9 74 58.1
Nitab4.5_0004532g0030 Nicotiana tabacum HOM05D007456 ORTHO05D009411 4.2e-16 90.5 94 53.2
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 4.2e-16 90.5 76 60.5
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 5.5e-16 90.1 86 57.0
Lj9A258G53 Lonicera japonica HOM05D007456 ORTHO05D009411 7.1e-16 89.7 138 41.3
Nitab4.5_0016432g0010 Nicotiana tabacum HOM05D007456 ORTHO05D009411 9.3e-16 89.4 67 65.7
GSVIVG01024456001 Vitis vinifera HOM05D007456 ORTHO05D009411 9.3e-16 89.4 124 46.8
FAN03G3193 Fragaria x ananassa HOM05D007456 ORTHO05D009411 1.2e-15 89.0 65 63.1
Oeu055445.1 Olea europaea HOM05D007456 ORTHO05D009411 2.7e-15 87.8 77 57.1
FAN10G0306 Fragaria x ananassa HOM05D007456 ORTHO05D009411 3.5e-15 87.4 60 65.0
FAN10G3274 Fragaria x ananassa HOM05D007456 ORTHO05D009411 3.5e-15 87.4 85 52.9
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 3.5e-15 87.4 154 42.2
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 6.0e-15 86.7 82 51.2
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 6.0e-15 86.7 82 51.2
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 7.9e-15 86.3 82 51.2
RcHm_v2.0_Chr1g0383591 Rosa chinensis HOM05D007456 ORTHO05D009411 1.0e-14 85.9 138 43.5
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 1.0e-14 85.9 65 60.0
Ah.07g203680 Amaranthus hybridus HOM05D007456 ORTHO05D009411 1.3e-14 85.5 65 60.0
CsaV3_4G004450 Cucumis sativus L. HOM05D007456 ORTHO05D009411 1.8e-14 85.1 80 52.5
AUR62005926 Chenopodium quinoa HOM05D007456 ORTHO05D009411 2.3e-14 84.7 76 51.3
Hma1.2p1_0758F.1_g213530 Hydrangea macrophylla HOM05D007456 ORTHO05D009411 3.0e-14 84.3 106 84.0
Cpa.g.sc252.21 Carica papaya HOM05D007456 ORTHO05D009411 6.7e-14 83.2 106 81.1
AUR62018885 Chenopodium quinoa HOM05D007456 ORTHO05D009411 1.1e-13 82.4 75 52.0
ClCG07G017250 Citrullus lanatus HOM05D007456 ORTHO05D009411 1.1e-13 82.4 80 48.8
Cpa.g.sc252.22 Carica papaya HOM05D007456 ORTHO05D009411 1.5e-13 82.0 71 60.6
vmacro06487 Vaccinium macrocarpon HOM05D007456 ORTHO05D009411 1.5e-13 82.0 67 58.2
QL09p026466 Quercus lobata HOM05D007456 ORTHO05D009411 3.3e-13 80.9 78 53.8
QL09p026540 Quercus lobata HOM05D007456 ORTHO05D009411 3.3e-13 80.9 78 53.8
Actinidia08731 Actinidia chinensis HOM05D007456 ORTHO05D009411 5.7e-13 80.1 140 35.0
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 5.7e-13 80.1 64 59.4
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 9.6e-13 79.3 112 40.2
DCAR_010527 Daucus carota HOM05D006163 ORTHO05D007625 1.6e-12 78.6 104 81.7
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 1.6e-12 78.6 67 56.7
THA.LOC104823813 Tarenaya hassleriana HOM05D007456 ORTHO05D009411 1.6e-12 78.6 65 53.8
EL10Ac3g05110 Beta vulgaris HOM05D007456 ORTHO05D009411 2.1e-12 78.2 76 44.7
Rhsim01G0125300 Rhododendron simsii HOM05D007456 ORTHO05D009411 2.1e-12 78.2 79 54.4
Thhalv10004016m.g Eutrema salsugineum HOM05D007456 ORTHO05D009411 8.2e-12 76.3 68 50.0
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 1.4e-11 75.5 53 67.9
BcaB06g27033 Brassica carinata HOM05D007456 ORTHO05D009411 1.8e-11 75.1 65 53.8
A04p10240 Brassica napus HOM05D007456 ORTHO05D009411 2.4e-11 74.7 65 53.8
BraA04t16690Z Brassica rapa HOM05D007456 ORTHO05D009411 2.4e-11 74.7 65 53.8
CDE02G0352 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 3.1e-11 74.3 53 66.0
MBI13_g23884_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 3.1e-11 74.3 95 76.8
SGA_v2.0_scaffold44G16881 Striga asiatica HOM05D007456 ORTHO05D009411 4.1e-11 73.9 60 56.7
AL7G45310 Arabidopsis lyrata HOM05D007456 ORTHO05D009411 5.3e-11 73.6 77 48.1
AT5G36300 Arabidopsis thaliana HOM05D007456 ORTHO05D009411 5.3e-11 73.6 46 69.6
BolC4t25953H Brassica oleracea HOM05D007456 ORTHO05D009411 6.9e-11 73.2 65 53.8
Zm00001eb011030 Zea mays HOM05D007456 ORTHO05D009411 1.2e-10 72.4 115 75.7
BcaC02g09523 Brassica carinata HOM05D007456 ORTHO05D009411 2.0e-10 71.6 65 53.8
HanXRQChr09g0260511 Helianthus annuus HOM05D007456 ORTHO05D009411 2.0e-10 71.6 128 38.3
CiPaw.06G020600 Carya illinoinensis HOM05D007456 ORTHO05D009411 3.4e-10 70.9 55 63.6
RcHm_v2.0_Chr1g0383651 Rosa chinensis HOM05D007456 ORTHO05D009411 4.5e-10 70.5 106 42.5
Sp7g05790 Schrenkiella parvula HOM05D007456 ORTHO05D009411 4.5e-10 70.5 125 36.8
FAN01G1025 Fragaria x ananassa HOM05D007456 ORTHO05D009411 5.9e-10 70.1 53 58.5
C04p43710 Brassica napus HOM05D007456 ORTHO05D009411 7.6e-10 69.7 65 52.3
Sc19g0000290 Simmondsia chinensis HOM05D007456 ORTHO05D009411 7.6e-10 69.7 76 46.1
Glyma.01G230600 Glycine max HOM05D007456 ORTHO05D009411 1.0e-09 69.3 101 39.6
Glyma.11G013600 Glycine max HOM05D007456 ORTHO05D009411 1.0e-09 69.3 80 45.0
CSS0006842 Camellia sinensis var. sinensis HOM05D007456 ORTHO05D009411 2.9e-09 67.8 41 80.5
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 5.0e-09 67.0 117 38.5
Haze_00583 Corylus avellana HOM05D007456 ORTHO05D009411 6.5e-09 66.6 126 41.3
FvH4_1g26290 Fragaria vesca HOM05D000003 ORTHO05D010713 6.5e-09 66.6 41 73.2
FAN19G0065 Fragaria x ananassa HOM05D007456 ORTHO05D009411 6.5e-09 66.6 41 73.2
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 1.1e-08 65.9 89 44.9
Prupe.2G323300 Prunus persica HOM05D007456 ORTHO05D009411 1.1e-08 65.9 102 39.2
Actinidia02801 Actinidia chinensis HOM05D007456 ORTHO05D009411 1.4e-08 65.5 42 69.0
SalBow4G3145 Salvia bowleyana HOM05D007456 ORTHO05D009411 4.2e-08 63.9 59 52.5
Rhsim02G0130700 Rhododendron simsii HOM05D007456 ORTHO05D009411 5.5e-08 63.5 35 82.9
Cfa015911 Carpinus fangiana HOM05D007456 ORTHO05D009411 7.2e-08 63.2 117 41.9
PSO782G5634 Papaver somniferum HOM05D035557 ORTHO05D028426 7.2e-08 63.2 124 37.9
SEGI_07154 Sequoiadendron giganteum HOM05D007456 ORTHO05D009411 1.2e-07 62.4 46 60.9
Atru.BG.267.p Acer truncatum HOM05D007456 ORTHO05D009411 2.1e-07 61.6 41 73.2
Manes.08G164911 Manihot esculenta HOM05D007456 ORTHO05D009411 3.6e-07 60.8 65 50.8
PSO063G1989 Papaver somniferum HOM05D035557 ORTHO05D028426 6.1e-07 60.1 124 37.1
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.3e-06 58.9 68 39.7
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 1.3e-06 58.9 68 39.7
Hund09765 Selenicereus undatus HOM05D007456 ORTHO05D009411 3.0e-06 57.8 58 43.1
Ciclev10011504m.g Citrus clementina HOM05D007456 ORTHO05D009411 3.9e-06 57.4 125 38.4
PSO591G0267 Papaver somniferum HOM05D035557 ORTHO05D028426 8.7e-06 56.2 124 37.1


User provided reference genes

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