Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 6.3e-36 153.7 83 100.0
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 8.8e-22 106.7 82 62.2
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 2.4e-19 98.6 82 65.9
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 5.9e-18 94.0 82 57.3
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 1.5e-16 89.4 82 50.0
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 5.5e-16 87.4 81 50.6
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 9.4e-16 86.7 81 49.4
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 4.7e-15 84.3 82 52.4
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 1.4e-14 82.8 80 53.8
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 1.8e-14 82.4 73 54.8
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 8.8e-14 80.1 80 52.5
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 1.2e-13 79.7 82 46.3
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 2.6e-13 78.6 80 52.5
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.6e-13 78.6 80 52.5
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.6e-13 78.6 80 52.5
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 2.6e-13 78.6 80 51.2
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 2.6e-13 78.6 80 52.5
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 2.6e-13 78.6 80 45.0
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 5.7e-13 77.4 70 55.7
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 5.7e-13 77.4 80 51.2
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 7.5e-13 77.0 75 48.0
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 7.5e-13 77.0 80 43.8
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.3e-12 76.3 80 50.0
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 1.3e-12 76.3 80 43.8
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 2.2e-12 75.5 80 46.2
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 3.7e-12 74.7 82 52.4
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 4.8e-12 74.3 82 46.3
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 8.3e-12 73.6 83 50.6
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 1.8e-11 72.4 80 50.0
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 2.4e-11 72.0 82 52.4
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 4.1e-11 71.2 50 60.0
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 4.1e-11 71.2 82 46.3
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 4.1e-11 71.2 76 47.4
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 4.1e-11 71.2 82 50.0
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 2.0e-10 68.9 82 42.7
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 7.7e-10 67.0 78 50.0
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 1.3e-09 66.2 80 45.0
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 5.0e-09 64.3 54 46.3
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 8.5e-09 63.5 42 66.7
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 1.1e-08 63.2 80 41.2
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 1.5e-08 62.8 81 44.4
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 2.5e-08 62.0 80 48.8
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 2.5e-08 62.0 67 38.8
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 2.5e-08 62.0 79 41.8
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 3.2e-08 61.6 70 41.4
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 4.2e-08 61.2 72 40.3
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 1.2e-07 59.7 80 40.0
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 1.2e-07 59.7 80 41.2
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 2.7e-07 58.5 54 46.3
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 2.7e-07 58.5 41 58.5
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 2.7e-07 58.5 41 58.5
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 4.7e-07 57.8 82 39.0
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 4.7e-07 57.8 80 40.0
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 6.1e-07 57.4 42 57.1
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 8.0e-07 57.0 79 40.5
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 1.4e-06 56.2 80 38.8
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 1.4e-06 56.2 70 40.0
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 1.4e-06 56.2 82 41.5
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 1.4e-06 56.2 82 41.5
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 1.4e-06 56.2 78 39.7
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 1.8e-06 55.8 41 56.1
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 8.8e-06 53.5 80 36.2


User provided reference genes

Program Settings