Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 5.6e-65 250.8 123 100.0
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.8e-39 166.0 125 66.4
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 9.3e-36 153.7 127 59.8
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.2e-35 153.3 122 63.1
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 2.7e-35 152.1 127 59.8
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 2.7e-35 152.1 122 62.3
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 3.5e-35 151.8 127 59.8
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.5e-35 151.8 131 58.8
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 4.6e-35 151.4 124 61.3
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 6.0e-35 151.0 120 62.5
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 7.9e-35 150.6 126 60.3
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 1.3e-34 149.8 119 62.2
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 3.0e-34 148.7 122 61.5
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 3.0e-34 148.7 121 61.2
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 5.1e-34 147.9 125 56.0
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 6.7e-34 147.5 125 60.8
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 8.7e-34 147.1 125 60.8
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.5e-33 145.6 118 59.3
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 2.5e-33 145.6 126 56.3
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 3.3e-33 145.2 135 54.8
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.3e-33 145.2 124 58.9
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 4.3e-33 144.8 124 58.9
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 5.6e-33 144.4 121 62.0
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 7.4e-33 144.1 119 61.3
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 9.6e-33 143.7 124 58.9
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 9.6e-33 143.7 121 62.0
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.3e-32 143.3 120 57.5
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 1.3e-32 143.3 120 59.2
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 1.6e-32 142.9 123 55.3
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.6e-32 142.9 124 58.1
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.6e-32 142.9 121 61.2
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.7e-32 141.7 124 58.1
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 4.8e-32 141.4 119 60.5
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 6.2e-32 141.0 120 59.2
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 6.2e-32 141.0 123 55.3
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 8.2e-32 140.6 120 54.2
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 8.2e-32 140.6 120 60.8
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.8e-31 139.4 119 55.5
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 2.4e-31 139.0 119 57.1
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 4.0e-31 138.3 123 58.5
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 5.3e-31 137.9 119 56.3
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 6.9e-31 137.5 119 53.8
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 6.9e-31 137.5 119 58.8
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 9.0e-31 137.1 126 57.1
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 9.0e-31 137.1 125 57.6
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 9.0e-31 137.1 126 55.6
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.2e-30 136.7 121 57.0
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.5e-30 136.3 126 57.1
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.0e-30 136.0 119 55.5
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 3.4e-30 135.2 119 54.6
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.4e-30 135.2 119 55.5
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.4e-30 135.2 119 55.5
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 3.4e-30 135.2 128 54.7
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 3.4e-30 135.2 126 54.8
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 4.5e-30 134.8 119 54.6
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 4.5e-30 134.8 125 52.8
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 5.8e-30 134.4 119 54.6
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.8e-30 134.4 126 55.6
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 5.8e-30 134.4 119 53.8
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.0e-29 133.7 88 65.9
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.0e-29 133.7 126 56.3
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.3e-29 133.3 121 59.5
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.7e-29 132.9 125 56.8
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 2.9e-29 132.1 123 55.3
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 2.9e-29 132.1 130 56.9
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 6.5e-29 131.0 130 54.6
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 6.5e-29 131.0 127 57.5
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.4e-28 129.8 136 49.3
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.9e-28 129.4 122 52.5
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 2.5e-28 129.0 119 52.1
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.2e-28 128.6 126 55.6
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 3.2e-28 128.6 124 52.4
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 5.5e-28 127.9 123 52.8
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 9.3e-28 127.1 124 50.8
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 9.3e-28 127.1 121 56.2
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 1.6e-27 126.3 127 55.9
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 2.1e-27 125.9 126 56.3
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.5e-27 125.2 126 54.8
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 3.5e-27 125.2 125 54.4
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 6.0e-27 124.4 137 51.8
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 1.3e-26 123.2 121 51.2
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.3e-26 123.2 126 55.6
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.3e-26 123.2 128 50.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.8e-26 122.9 124 50.0
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.8e-26 122.9 123 54.5
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.8e-26 122.9 128 53.9
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 2.3e-26 122.5 121 52.1
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 2.3e-26 122.5 125 53.6
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 3.0e-26 122.1 129 52.7
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.9e-26 121.7 122 52.5
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 3.9e-26 121.7 122 52.5
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.1e-26 121.3 123 52.0
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 5.1e-26 121.3 133 45.9
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 6.7e-26 120.9 122 53.3
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.1e-25 120.2 122 53.3
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 1.5e-25 119.8 121 49.6
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 5.7e-25 117.9 122 50.0
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 9.7e-25 117.1 120 49.2
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 1.3e-24 116.7 120 52.5
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.2e-24 115.9 121 53.7
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.8e-24 115.5 116 48.3
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 6.3e-24 114.4 132 49.2
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 8.2e-24 114.0 122 47.5
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 1.4e-23 113.2 123 48.8
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.8e-23 112.8 118 48.3
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 2.0e-22 109.4 122 49.2
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 6.5e-21 104.4 111 49.5
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 6.5e-21 104.4 132 40.9
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 8.5e-21 104.0 132 42.4
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.1e-20 103.6 131 48.1
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.1e-20 103.6 136 41.9
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 1.4e-20 103.2 118 48.3
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.9e-20 102.8 127 48.8
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 5.5e-20 101.3 119 48.7
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 2.1e-19 99.4 133 42.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.7e-19 99.0 65 64.6
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.0e-18 97.1 121 45.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 4.3e-17 91.7 121 43.8
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 4.3e-17 91.7 135 40.7
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 1.7e-16 89.7 115 40.9
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 2.8e-16 89.0 126 42.9
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 3.7e-16 88.6 123 37.4
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 8.2e-16 87.4 123 42.3
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.3e-13 80.1 104 39.4
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.9e-13 79.0 118 39.8
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 3.8e-13 78.6 123 37.4
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.0e-13 78.2 56 58.9
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.1e-12 77.0 59 54.2
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 2.5e-12 75.9 46 71.7
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.2e-12 75.1 87 37.9
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 5.5e-12 74.7 66 51.5
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 9.4e-12 73.9 119 36.1
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 3.6e-11 72.0 62 51.6
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 3.6e-11 72.0 63 46.0
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 3.0e-10 68.9 88 44.3
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 2.0e-09 66.2 124 33.1
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 4.4e-09 65.1 75 42.7
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 5.7e-09 64.7 126 33.3
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.7e-08 63.2 87 41.4
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 5.3e-07 58.2 61 42.6
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 7.7e-06 54.3 49 42.9


User provided reference genes

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