Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 3.0e-143 511.9 276 100.0
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 1.2e-75 287.3 281 60.1
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.6e-56 223.8 283 49.8
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 3.0e-42 176.4 306 43.1
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 2.0e-41 173.7 306 41.2
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 2.5e-41 173.3 317 42.6
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 3.3e-41 172.9 282 45.7
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 2.8e-40 169.9 294 44.9
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 6.3e-40 168.7 298 43.3
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 1.8e-39 167.2 314 41.1
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.8e-39 167.2 318 40.9
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 1.3e-37 161.0 330 39.4
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 1.1e-36 157.9 314 39.5
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 1.1e-36 157.9 284 41.2
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.4e-36 157.5 321 38.3
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 2.5e-36 156.8 283 39.9
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 5.5e-36 155.6 279 40.9
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 9.4e-36 154.8 296 41.6
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 1.2e-35 154.5 303 41.3
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 2.7e-35 153.3 257 42.8
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 4.7e-35 152.5 300 42.0
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 6.1e-35 152.1 281 40.9
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.0e-34 151.4 316 38.0
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 1.8e-34 150.6 293 42.0
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 6.7e-34 148.7 301 40.9
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 1.1e-33 147.9 282 41.5
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 3.3e-33 146.4 276 38.8
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 3.3e-33 146.4 272 37.5
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 3.3e-33 146.4 289 38.8
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 5.7e-33 145.6 286 40.6
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 1.7e-32 144.1 278 38.8
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 4.8e-32 142.5 347 34.0
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 6.3e-32 142.1 297 41.8
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 3.1e-31 139.8 275 37.1
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 5.3e-31 139.0 276 37.3
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 9.1e-31 138.3 299 39.8
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 9.1e-31 138.3 287 40.8
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 1.5e-30 137.5 293 38.2
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 4.5e-30 136.0 280 39.3
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 2.9e-29 133.3 282 40.8
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 3.8e-29 132.9 283 40.6
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 6.5e-29 132.1 302 37.7
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 2.5e-28 130.2 282 37.9
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 2.5e-28 130.2 280 39.6
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 3.2e-28 129.8 267 37.5
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 3.2e-28 129.8 272 40.1
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 9.4e-28 128.3 308 35.1
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 9.4e-28 128.3 308 35.1
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 9.4e-28 128.3 290 39.3
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.2e-27 127.9 298 39.3
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.2e-27 127.9 289 39.4
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 1.2e-27 127.9 328 32.9
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 2.7e-27 126.7 294 37.8
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 3.0e-26 123.2 297 38.4
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 3.9e-26 122.9 278 37.8
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 5.2e-26 122.5 275 39.3
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 4.8e-24 115.9 286 35.7
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 6.3e-24 115.5 273 36.3
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 1.4e-23 114.4 336 34.2
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 1.4e-23 114.4 282 36.2
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 2.4e-23 113.6 271 35.4
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 2.4e-23 113.6 282 35.8
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 5.3e-23 112.5 275 36.7
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 1.2e-22 111.3 106 50.0
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 4.5e-22 109.4 280 38.6
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 7.7e-22 108.6 305 33.1
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 1.0e-21 108.2 293 35.2
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 1.6e-19 100.9 318 30.8
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 2.1e-19 100.5 289 37.7
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 4.7e-19 99.4 282 35.5
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 1.0e-18 98.2 283 32.5
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 1.4e-18 97.8 304 33.2
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 1.8e-18 97.4 274 38.7
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 6.7e-18 95.5 311 30.5
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 1.2e-17 94.7 304 32.9
Zm00001eb227690 Zea mays HOM05D005197 ORTHO05D006263 1.5e-17 94.4 277 34.3
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 7.5e-17 92.0 296 32.4
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 7.5e-17 92.0 296 32.4
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 9.7e-17 91.7 296 31.4
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.3e-16 91.3 101 46.5
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 1.7e-16 90.9 311 29.9
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 2.8e-16 90.1 278 34.2
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 2.8e-16 90.1 101 46.5
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 4.8e-16 89.4 269 34.2
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 6.3e-16 89.0 306 30.1
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 6.3e-16 89.0 334 31.4
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 8.3e-16 88.6 173 44.5
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 8.3e-16 88.6 321 30.2
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 5.3e-15 85.9 278 34.2
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 5.3e-15 85.9 262 31.7
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 7.0e-15 85.5 287 31.4
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 2.0e-14 84.0 235 37.0
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 2.0e-14 84.0 279 34.4
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 7.7e-14 82.0 274 29.6
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 1.7e-13 80.9 246 32.5
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 3.8e-13 79.7 248 34.3
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 1.1e-12 78.2 59 64.4
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 1.5e-12 77.8 101 39.6
HPP92_022730 Vanilla planifolia HOM05D005197 ORTHO05D006263 2.5e-12 77.0 269 30.1
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 4.2e-12 76.3 78 52.6
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 5.5e-12 75.9 59 64.4
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 5.5e-12 75.9 59 64.4
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 5.5e-12 75.9 104 43.3
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 1.2e-11 74.7 76 53.9
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 1.2e-11 74.7 104 42.3
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 1.2e-11 74.7 95 43.2
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 2.1e-11 73.9 59 62.7
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 2.1e-11 73.9 59 62.7
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 2.1e-11 73.9 94 41.5
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 3.6e-11 73.2 103 42.7
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 3.6e-11 73.2 104 39.4
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 4.7e-11 72.8 69 55.1
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 8.0e-11 72.0 260 31.9
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 1.8e-10 70.9 61 60.7
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 3.0e-10 70.1 191 37.2
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 6.8e-10 68.9 371 27.8
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 1.5e-09 67.8 73 53.4
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 2.0e-09 67.4 95 40.0
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 2.6e-09 67.0 96 38.5
Os06g0710900 Oryza sativa ssp. japonica HOM05D005197 ORTHO05D006263 3.4e-09 66.6 276 29.7
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 1.7e-08 64.3 100 38.0
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 2.2e-08 63.9 95 38.9
AL1G31860 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 4.8e-08 62.8 83 48.2
AL1G37050 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 4.8e-08 62.8 83 49.4
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 1.1e-07 61.6 64 48.4
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 1.4e-07 61.2 95 41.1
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 1.4e-07 61.2 84 40.5
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 5.4e-07 59.3 63 52.4
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 9.1e-07 58.5 279 31.9
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 1.6e-06 57.8 93 34.4
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 3.5e-06 56.6 255 31.8
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 3.5e-06 56.6 86 34.9
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 5.9e-06 55.8 45 60.0
SalBow2G1093 Salvia bowleyana HOM05D005197 ORTHO05D006263 7.7e-06 55.5 53 50.9


User provided reference genes

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