Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.6e-255 885.6 441 100.0
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.2e-197 693.3 424 82.1
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 6.0e-186 654.4 462 72.1
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 2.8e-183 645.6 461 71.6
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 7.1e-179 630.9 461 69.8
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 7.1e-179 630.9 458 68.3
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 9.3e-179 630.6 457 70.0
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 2.1e-178 629.4 464 70.5
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 4.6e-178 628.2 461 69.8
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 6.0e-178 627.9 510 64.1
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 3.0e-177 625.5 458 69.2
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 3.0e-177 625.5 461 68.8
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 3.9e-177 625.2 478 68.4
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 6.7e-177 624.4 461 68.8
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 6.7e-177 624.4 461 68.8
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.5e-176 623.2 464 67.2
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 1.9e-176 622.9 462 67.3
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 1.9e-176 622.9 461 68.3
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 2.5e-176 622.5 458 68.8
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 2.5e-176 622.5 460 67.2
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 5.6e-176 621.3 477 67.3
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 7.4e-176 620.9 459 68.2
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 9.6e-176 620.5 461 67.9
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 1.3e-175 620.2 464 69.2
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.3e-175 620.2 460 69.6
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 2.1e-175 619.4 458 67.7
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.1e-175 619.4 461 68.1
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 2.8e-175 619.0 458 67.9
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 3.7e-175 618.6 449 70.2
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 8.2e-175 617.5 459 68.4
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 2.4e-174 615.9 459 68.4
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 4.0e-174 615.1 462 66.7
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.2e-173 613.6 462 66.7
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 1.2e-173 613.6 458 67.2
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 4.5e-173 611.7 457 67.4
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 1.0e-172 610.5 472 66.5
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.0e-172 610.5 457 68.9
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 1.3e-172 610.1 460 68.9
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 1.3e-172 610.1 460 68.9
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 3.8e-172 608.6 461 67.9
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 1.4e-171 606.7 470 66.2
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.4e-171 606.7 459 66.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 7.1e-171 604.4 458 67.0
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.2e-170 603.6 467 65.7
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.2e-170 603.6 461 65.5
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 2.1e-170 602.8 461 67.9
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 1.0e-169 600.5 461 67.7
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 5.1e-169 598.2 460 66.1
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 6.7e-169 597.8 460 65.9
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 6.7e-169 597.8 460 65.7
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 1.1e-168 597.0 461 67.0
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 1.9e-168 596.3 461 66.6
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 1.9e-168 596.3 501 61.5
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 3.3e-168 595.5 460 66.3
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.3e-168 595.5 458 66.4
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 3.3e-168 595.5 456 66.9
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 3.3e-168 595.5 474 65.0
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 4.3e-168 595.1 461 66.6
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 5.7e-168 594.7 464 67.2
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 7.4e-168 594.3 467 65.3
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.3e-167 593.6 464 67.2
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 1.3e-167 593.6 462 66.5
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.6e-167 593.2 464 67.0
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 2.8e-167 592.4 463 65.0
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.8e-167 591.7 477 66.2
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 1.1e-166 590.5 461 66.8
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 1.4e-166 590.1 461 66.6
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.8e-166 589.7 461 65.9
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 6.9e-166 587.8 459 65.1
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 9.0e-166 587.4 461 65.5
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 1.7e-164 583.2 455 66.4
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 1.7e-164 583.2 455 66.4
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 1.7e-164 583.2 463 64.1
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 2.9e-164 582.4 455 66.6
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 2.9e-164 582.4 463 67.4
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 4.2e-163 578.6 452 66.4
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 1.6e-162 576.6 458 64.4
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 2.3e-161 572.8 465 63.7
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 3.0e-161 572.4 465 63.7
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 8.8e-161 570.9 459 63.6
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 3.7e-159 565.5 459 63.4
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 6.3e-159 564.7 459 63.6
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.1e-158 563.9 467 64.0
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 2.2e-156 556.2 460 61.1
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 7.9e-154 547.7 442 64.7
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.4e-153 547.0 443 64.8
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 1.5e-152 543.5 455 60.2
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 7.7e-149 531.2 401 66.3
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 8.5e-148 527.7 461 61.8
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.3e-143 513.8 399 64.9
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.2e-141 507.3 479 59.5
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 1.7e-140 503.4 426 61.5
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 3.2e-139 499.2 461 58.8
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 4.2e-139 498.8 444 59.2
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 1.2e-130 470.7 464 55.0
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 2.7e-130 469.5 446 54.9
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 1.8e-129 466.8 480 55.8
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 2.8e-127 459.5 302 78.1
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 2.5e-115 419.9 300 72.0
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 2.0e-109 400.2 407 56.3
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 8.6e-108 394.8 344 59.3
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 3.5e-101 372.9 282 67.4
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 7.3e-99 365.2 306 65.0
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 2.5e-91 340.1 460 41.5
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 2.4e-89 333.6 302 56.3
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 8.9e-89 331.6 364 51.6
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 2.0e-88 330.5 438 47.5
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 4.9e-87 325.9 399 47.4
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 6.2e-82 308.9 469 39.9
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 1.8e-81 307.4 346 54.3
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 2.4e-81 307.0 470 40.2
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.5e-77 293.1 308 56.2
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 7.3e-75 285.4 452 38.1
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 8.4e-71 271.9 235 64.3
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 5.8e-64 249.2 226 55.3
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 1.5e-59 234.6 255 46.7
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 1.0e-52 211.8 233 51.9
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 3.4e-48 196.8 126 70.6
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.1e-46 191.8 144 61.1
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 2.0e-43 181.0 159 62.9
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 3.4e-40 170.2 148 57.4
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 5.9e-40 169.5 119 66.4
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 3.9e-36 156.8 145 53.8
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 6.7e-36 156.0 119 65.5
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-32 145.2 124 56.5
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 2.8e-26 124.0 97 64.9
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 2.2e-18 97.8 102 51.0
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.9e-14 84.7 52 80.8
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 7.2e-14 82.8 197 33.5
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-11 75.1 225 30.7
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 2.8e-10 70.9 54 70.4
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 1.2e-08 65.5 86 43.0


User provided reference genes

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