Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09167 Nelumbo nucifera HOM05D063783 ORTHO05D010310 1.0e-44 183.0 88 100.0
Sabra11G0031600 Salix brachista HOM05D001771 ORTHO05D001876 5.9e-16 87.4 78 57.7
QL05p037029 Quercus lobata HOM05D001771 ORTHO05D001876 2.2e-15 85.5 61 67.2
Sed0018004 Sechium edule HOM05D001771 ORTHO05D010310 5.0e-15 84.3 61 60.7
Lsat_1_v5_gn_9_88381 Lactuca sativa HOM05D001771 ORTHO05D010310 8.5e-15 83.6 58 63.8
Dinv40518 Davidia involucrata HOM05D001771 ORTHO05D001876 4.2e-14 81.3 52 73.1
Nn5g28733 Nelumbo nucifera HOM05D001771 ORTHO05D010310 5.5e-14 80.9 51 82.4
Nn8g40358 Nelumbo nucifera HOM05D001771 ORTHO05D010310 2.1e-13 79.0 39 97.4
Dinv11937 Davidia involucrata HOM05D001771 ORTHO05D001876 4.6e-13 77.8 60 63.3
Zm00001eb432610 Zea mays HOM05D001771 ORTHO05D010310 2.3e-12 75.5 57 52.6
Nn3g21593 Nelumbo nucifera HOM05D063783 ORTHO05D010310 8.8e-12 73.6 75 57.3
Zm00001eb054750 Zea mays HOM05D001248 ORTHO05D001876 8.8e-12 73.6 57 52.6
Nitab4.5_0007390g0010 Nicotiana tabacum HOM05D001771 ORTHO05D001876 1.1e-11 73.2 100 41.0
VMungo0251G2688 Vigna mungo HOM05D009237 ORTHO05D010310 2.5e-11 72.0 61 57.4
MBI18_g13203_MAGBIO Magnolia biondii HOM05D001771 ORTHO05D010310 3.3e-11 71.6 44 75.0
TAR627G0702 Trochodendron aralioides HOM05D001771 ORTHO05D001876 5.7e-11 70.9 45 77.8
AUR62014751 Chenopodium quinoa HOM05D001771 ORTHO05D001876 7.4e-11 70.5 53 62.3
ClCG03G005630 Citrullus lanatus HOM05D001771 ORTHO05D001876 1.3e-10 69.7 45 71.1
AUR62016929 Chenopodium quinoa HOM05D001771 ORTHO05D001876 1.7e-10 69.3 46 67.4
Haze_06544 Corylus avellana HOM05D001771 ORTHO05D001876 1.7e-10 69.3 44 75.0
Gorai.005G214400 Gossypium raimondii HOM05D001771 ORTHO05D001876 2.8e-10 68.6 43 67.4
Gohir.A01G011900 Gossypium hirsutum HOM05D001771 ORTHO05D001876 6.3e-10 67.4 89 43.8
Ca_00295_v3 Cicer arietinum L. HOM05D001771 ORTHO05D010310 8.2e-10 67.0 45 68.9
Lsat_1_v5_gn_4_55580 Lactuca sativa HOM05D001771 ORTHO05D001876 2.4e-09 65.5 44 63.6
Gorai.007G256000 Gossypium raimondii HOM05D001771 ORTHO05D010310 3.1e-09 65.1 45 68.9
vmacro10905 Vaccinium macrocarpon HOM05D001771 ORTHO05D001876 3.1e-09 65.1 48 60.4
Zm00001eb356040 Zea mays HOM05D001771 ORTHO05D001876 3.1e-09 65.1 60 51.7
SGA_v2.0_scaffold22G09742 Striga asiatica HOM05D001771 ORTHO05D001876 5.3e-09 64.3 43 72.1
RcHm_v2.0_Chr7g0189991 Rosa chinensis HOM05D061369 ORTHO05D010829 6.9e-09 63.9 44 65.9
AUR62019629 Chenopodium quinoa HOM05D001771 ORTHO05D001876 1.2e-08 63.2 44 65.9
Thhalv10023227m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 1.2e-08 63.2 46 65.2
Hma1.2p1_0191F.1_g083430 Hydrangea macrophylla HOM05D001771 ORTHO05D001876 1.2e-08 63.2 46 63.0
AL1G22180 Arabidopsis lyrata HOM05D001771 ORTHO05D001876 1.5e-08 62.8 45 64.4
RcHm_v2.0_Chr5g0007181 Rosa chinensis HOM05D001771 ORTHO05D023729 1.5e-08 62.8 110 36.4
Aa31LG2G9410 Aethionema arabicum HOM05D001771 ORTHO05D001876 2.0e-08 62.4 45 64.4
AL2G15150 Arabidopsis lyrata HOM05D001771 ORTHO05D001876 2.0e-08 62.4 45 64.4
CSS0037079 Camellia sinensis var. sinensis HOM05D001771 ORTHO05D001876 2.0e-08 62.4 44 63.6
CiPaw.10G121000 Carya illinoinensis HOM05D001771 ORTHO05D001876 2.0e-08 62.4 40 72.5
AUR62031664 Chenopodium quinoa HOM05D001771 ORTHO05D001876 2.0e-08 62.4 44 63.6
Gohir.D06G211500 Gossypium hirsutum HOM05D001771 ORTHO05D001876 2.0e-08 62.4 45 64.4
Sed0014586 Sechium edule HOM05D001771 ORTHO05D001876 2.0e-08 62.4 43 65.1
BcaC02g10583 Brassica carinata HOM05D001771 ORTHO05D001876 7.7e-08 60.5 60 53.3
C04p27210 Brassica napus HOM05D001771 ORTHO05D001876 7.7e-08 60.5 60 53.3
BolC4t24253H Brassica oleracea HOM05D001771 ORTHO05D001876 7.7e-08 60.5 60 53.3
Actinidia05596 Actinidia chinensis HOM05D001771 ORTHO05D001876 1.0e-07 60.1 44 63.6
A09p64520 Brassica napus HOM05D001771 ORTHO05D001876 1.0e-07 60.1 46 56.5
BraA09t41801Z Brassica rapa HOM05D001771 ORTHO05D002740 1.0e-07 60.1 46 56.5
Thhalv10006699m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 1.0e-07 60.1 41 68.3
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.3e-07 59.7 82 40.2
C08p48320 Brassica napus HOM05D001771 ORTHO05D002740 2.2e-07 58.9 46 54.3
CARHR011350 Cardamine hirsuta HOM05D001771 ORTHO05D010310 2.2e-07 58.9 40 67.5
vmacro22269 Vaccinium macrocarpon HOM05D001771 ORTHO05D001876 2.9e-07 58.5 46 60.9
DCAR_028121 Daucus carota HOM05D001771 ORTHO05D001876 3.8e-07 58.2 41 65.9
BraA03t09729Z Brassica rapa HOM05D001771 ORTHO05D001876 1.1e-06 56.6 50 58.0
Thhalv10023689m.g Eutrema salsugineum HOM05D001771 ORTHO05D001876 1.4e-06 56.2 39 69.2
DCAR_023502 Daucus carota HOM05D001771 ORTHO05D001876 1.9e-06 55.8 41 61.0
BcaNung03851 Brassica carinata HOM05D001771 ORTHO05D001876 9.4e-06 53.5 48 54.2


User provided reference genes

Program Settings