Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 8.6e-99 363.6 178 100.0
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 4.3e-82 308.1 178 84.8
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.8e-81 305.4 178 83.1
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 8.1e-81 303.9 177 83.6
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.8e-80 302.8 178 83.1
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 2.3e-80 302.4 178 83.1
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.2e-79 300.1 167 84.4
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.2e-79 300.1 176 85.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 2.0e-79 299.3 178 81.5
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 5.8e-79 297.7 178 82.0
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 7.5e-79 297.4 178 81.5
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 1.3e-78 296.6 178 82.6
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 1.7e-78 296.2 178 80.3
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 1.7e-78 296.2 178 84.3
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 2.2e-78 295.8 178 82.0
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.2e-78 295.8 178 79.8
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 4.9e-78 294.7 178 83.7
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 4.9e-78 294.7 180 81.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 4.9e-78 294.7 178 81.5
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 6.4e-78 294.3 178 79.8
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 6.4e-78 294.3 178 81.5
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 6.4e-78 294.3 178 82.6
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 6.4e-78 294.3 178 82.0
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 6.4e-78 294.3 178 82.0
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 6.4e-78 294.3 178 79.8
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 6.4e-78 294.3 178 77.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 8.3e-78 293.9 178 82.0
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.4e-77 293.1 180 81.1
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 2.4e-77 292.4 178 80.3
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.2e-77 292.0 178 79.8
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 4.1e-77 291.6 178 80.3
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 5.4e-77 291.2 178 80.3
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 7.1e-77 290.8 178 81.5
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 9.2e-77 290.4 178 79.2
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 1.2e-76 290.0 178 79.8
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.6e-76 289.7 176 77.8
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.1e-76 289.3 176 77.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 2.1e-76 289.3 179 78.2
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 2.7e-76 288.9 183 79.8
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.7e-76 288.9 178 79.2
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.5e-76 288.5 176 77.3
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 4.6e-76 288.1 178 80.3
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 6.0e-76 287.7 176 77.3
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 7.8e-76 287.3 167 79.0
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.0e-75 287.0 167 83.8
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.0e-75 287.0 166 78.9
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 1.3e-75 286.6 178 78.7
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.3e-75 286.6 178 79.2
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.3e-75 286.6 178 78.7
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.3e-75 286.6 178 78.7
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.3e-75 286.6 178 78.7
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 1.7e-75 286.2 178 78.7
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.7e-75 286.2 178 78.7
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.0e-75 285.4 178 79.8
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 3.9e-75 285.0 178 79.2
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 6.6e-75 284.3 167 78.4
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.1e-74 283.5 178 78.7
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.5e-74 283.1 178 78.1
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.5e-74 282.3 174 75.3
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.6e-74 281.2 167 77.8
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 5.6e-74 281.2 173 80.9
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 7.3e-74 280.8 162 84.0
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 9.5e-74 280.4 171 77.8
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 9.5e-74 280.4 178 78.1
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-73 280.0 167 77.2
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.6e-73 279.6 168 78.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 2.1e-73 279.3 178 77.0
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.1e-73 279.3 178 77.0
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.8e-73 278.9 179 77.1
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 3.6e-73 278.5 176 77.3
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 4.7e-73 278.1 179 75.4
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.1e-73 277.3 167 76.6
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.1e-72 276.9 176 76.1
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.3e-72 275.8 178 76.4
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 3.1e-72 275.4 178 75.8
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 3.1e-72 275.4 178 76.4
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.0e-72 275.0 178 74.7
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 5.2e-72 274.6 178 75.8
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 6.8e-72 274.2 167 80.8
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 6.8e-72 274.2 178 78.1
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 6.8e-72 274.2 167 78.4
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 1.5e-71 273.1 178 74.2
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.5e-71 273.1 178 74.7
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 2.0e-71 272.7 156 83.3
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 2.0e-71 272.7 167 77.8
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.0e-71 272.7 178 75.8
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 2.6e-71 272.3 178 73.6
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.6e-71 272.3 178 74.7
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 2.6e-71 272.3 176 73.9
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 3.4e-71 271.9 178 75.3
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 3.4e-71 271.9 230 64.3
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 3.4e-71 271.9 178 74.7
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 7.6e-71 270.8 160 79.4
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 7.6e-71 270.8 168 77.4
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 1.7e-70 269.6 178 73.0
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 2.2e-70 269.2 178 74.7
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 2.9e-70 268.9 176 73.3
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 3.8e-70 268.5 178 74.2
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 6.4e-70 267.7 167 76.0
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 8.4e-70 267.3 166 75.3
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.1e-69 266.9 183 74.9
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.4e-69 266.5 180 74.4
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.9e-69 266.2 167 75.4
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 4.1e-69 265.0 178 71.3
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 4.1e-69 265.0 168 75.0
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 4.1e-69 265.0 174 73.6
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 5.4e-69 264.6 178 73.6
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 5.4e-69 264.6 167 76.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 2.1e-68 262.7 166 74.7
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 2.1e-68 262.7 174 73.0
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 4.6e-68 261.5 155 80.6
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 6.0e-68 261.2 166 74.1
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 6.0e-68 261.2 166 74.1
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 6.0e-68 261.2 166 74.1
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 7.8e-68 260.8 166 74.1
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 7.8e-68 260.8 151 81.5
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 2.3e-67 259.2 178 70.2
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 2.3e-67 259.2 179 70.4
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 2.3e-67 259.2 178 69.7
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 8.6e-67 257.3 178 70.2
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.5e-66 255.8 178 70.2
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 3.3e-66 255.4 171 70.8
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 7.3e-66 254.2 166 72.3
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 1.2e-65 253.4 166 73.5
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 2.8e-65 252.3 160 76.9
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.6e-65 251.9 166 72.9
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 8.1e-65 250.8 167 73.1
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 5.2e-64 248.1 179 67.6
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.0e-63 246.1 167 69.5
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 9.9e-63 243.8 167 71.3
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 8.4e-62 240.7 176 68.8
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.4e-61 239.2 175 66.3
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 1.6e-60 236.5 176 64.8
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.5e-55 219.9 167 64.1
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 2.0e-55 219.5 170 62.9
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.0e-51 207.2 143 70.6
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 4.3e-50 201.8 125 78.4
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.5e-47 193.4 125 76.8
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.5e-47 193.4 125 76.8
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 3.4e-47 192.2 125 76.0
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.4e-47 192.2 117 81.2
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.1e-45 187.2 125 72.8
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 4.6e-44 181.8 189 50.3
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 7.9e-44 181.0 114 75.4
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 8.4e-38 161.0 178 48.3
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.5e-37 159.5 113 69.0
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 4.6e-36 155.2 95 77.9
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.0e-36 154.8 99 71.7
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.9e-36 154.5 106 68.9
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-34 150.6 112 63.4
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.8e-27 126.7 109 56.9
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.4e-24 116.3 60 86.7
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.5e-23 113.6 175 36.6
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 6.1e-20 101.7 128 45.3
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.3e-19 99.8 117 44.4
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.1e-19 98.6 88 54.5
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 2.6e-18 96.3 54 81.5
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 1.1e-16 90.9 157 35.7
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.4e-16 89.7 52 80.8
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-15 86.7 98 50.0
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 7.7e-15 84.7 48 81.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 3.8e-14 82.4 50 78.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 6.5e-14 81.6 62 64.5
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 2.9e-06 56.2 35 71.4


User provided reference genes

Program Settings