Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09114 Nelumbo nucifera HOM05D000100 ORTHO05D004702 1.6e-89 332.8 171 100.0
Nn2g12291 Nelumbo nucifera HOM05D000100 ORTHO05D004702 3.3e-23 112.5 151 55.0
Gohir.A13G080100 Gossypium hirsutum HOM05D000100 ORTHO05D004702 4.8e-22 108.6 168 46.4
RcHm_v2.0_Chr2g0166721 Rosa chinensis HOM05D000100 ORTHO05D004702 8.1e-22 107.8 151 51.7
Atru.chr11.1687 Acer truncatum HOM05D000100 ORTHO05D004702 1.1e-21 107.5 152 48.7
Cfa008904 Carpinus fangiana HOM05D000100 ORTHO05D004702 1.1e-21 107.5 150 50.7
Nn3g17373 Nelumbo nucifera HOM05D000100 ORTHO05D004702 3.1e-21 105.9 120 61.7
Sabra04G0066700 Salix brachista HOM05D000100 ORTHO05D004702 3.1e-21 105.9 147 49.0
CiPaw.06G090300 Carya illinoinensis HOM05D000100 ORTHO05D004702 5.3e-21 105.1 138 51.4
Haze_11979 Corylus avellana HOM05D006961 ORTHO05D004702 5.3e-21 105.1 152 49.3
Thecc.02G336200 Theobroma cacao HOM05D000100 ORTHO05D004702 5.3e-21 105.1 149 49.7
FAN09G0588 Fragaria x ananassa HOM05D000100 ORTHO05D004702 6.9e-21 104.8 150 50.0
Cfa008906 Carpinus fangiana HOM05D000100 ORTHO05D004702 9.0e-21 104.4 152 49.3
Aqoxy3G03555 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 1.2e-20 104.0 140 50.7
CSS0031209 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 1.5e-20 103.6 148 49.3
FAN05G0827 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.5e-20 103.6 150 50.0
Ciclev10031419m.g Citrus clementina HOM05D000100 ORTHO05D004702 2.0e-20 103.2 140 48.6
Haze_11933 Corylus avellana HOM05D002318 ORTHO05D004713 2.0e-20 103.2 150 49.3
FvH4_6g47620 Fragaria vesca HOM05D000100 ORTHO05D004702 2.6e-20 102.8 150 49.3
Thecc.02G335900 Theobroma cacao HOM05D000100 ORTHO05D004702 4.5e-20 102.1 150 48.0
Prupe.3G260200 Prunus persica HOM05D000100 ORTHO05D004702 5.8e-20 101.7 151 50.3
CANSAT64G1162 Cannabis sativa HOM05D000100 ORTHO05D004702 4.9e-19 98.6 144 49.3
Rhsim08G0073000 Rhododendron simsii HOM05D000100 ORTHO05D004702 4.9e-19 98.6 150 48.0
Manes.02G050500 Manihot esculenta HOM05D000100 ORTHO05D004702 6.5e-19 98.2 150 48.7
Potri.004G126000 Populus trichocarpa HOM05D000100 ORTHO05D004702 8.4e-19 97.8 146 47.9
Aqoxy3G03556 Aquilegia oxysepala HOM05D000100 ORTHO05D004702 1.4e-18 97.1 151 49.7
Lalb_Chr17g0341021 Lupinus albus HOM05D000100 ORTHO05D004702 1.9e-18 96.7 157 45.9
Sabra17G0078700 Salix brachista HOM05D000100 ORTHO05D004702 1.9e-18 96.7 146 48.6
PSO528G0286 Papaver somniferum HOM05D000100 ORTHO05D004702 3.2e-18 95.9 152 46.1
Potri.017G089000 Populus trichocarpa HOM05D000100 ORTHO05D004702 3.2e-18 95.9 145 48.3
Thecc.02G336100 Theobroma cacao HOM05D000100 ORTHO05D004702 3.2e-18 95.9 148 47.3
Duzib268G1512 Durio zibethinus HOM05D000100 ORTHO05D004702 4.2e-18 95.5 138 48.6
TPR.G39983 Trifolium pratense HOM05D000100 ORTHO05D004702 4.2e-18 95.5 142 45.1
Dinv33803 Davidia involucrata HOM05D000100 ORTHO05D004702 5.5e-18 95.1 152 47.4
Rhsim10G0047000 Rhododendron simsii HOM05D000100 ORTHO05D004702 1.6e-17 93.6 149 42.3
Atru.chr11.1686 Acer truncatum HOM05D000100 ORTHO05D004702 2.1e-17 93.2 151 47.0
Medtr4g082820 Medicago truncatula HOM05D000100 ORTHO05D004702 2.1e-17 93.2 136 45.6
DCAR_025404 Daucus carota HOM05D000100 ORTHO05D004702 3.5e-17 92.4 142 49.3
ClCG05G023870 Citrullus lanatus HOM05D000100 ORTHO05D004702 6.0e-17 91.7 151 43.7
Eucgr.J01468 Eucalyptus grandis HOM05D000100 ORTHO05D004702 6.0e-17 91.7 140 43.6
PGR083G0325 Punica granatum HOM05D000100 ORTHO05D004702 5.1e-16 88.6 141 46.8
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 6.7e-16 88.2 133 46.6
COL.COLO4_27928 Corchorus olitorius HOM05D000100 ORTHO05D004702 6.7e-16 88.2 143 44.8
Ca_18817_v3 Cicer arietinum L. HOM05D000100 ORTHO05D004702 8.7e-16 87.8 164 42.7
vmacro05669 Vaccinium macrocarpon HOM05D000100 ORTHO05D004702 2.5e-15 86.3 151 37.7
CiPaw.06G090200 Carya illinoinensis HOM05D000100 ORTHO05D004702 5.7e-15 85.1 139 45.3
DCAR_021666 Daucus carota HOM05D000100 ORTHO05D004702 7.4e-15 84.7 181 37.6
MD17G1055700 Malus domestica HOM05D000100 ORTHO05D004702 7.4e-15 84.7 141 39.7
Psat2g128120 Pisum sativum HOM05D000100 ORTHO05D004702 7.4e-15 84.7 163 42.3
QL02p073358 Quercus lobata HOM05D000100 ORTHO05D004702 7.4e-15 84.7 144 38.9
MELO3C012135.2 Cucumis melo HOM05D000100 ORTHO05D004702 2.1e-14 83.2 151 41.7
CsaV3_5G033150 Cucumis sativus L. HOM05D000100 ORTHO05D004702 2.1e-14 83.2 149 43.0
Lj2g0007579 Lotus japonicus HOM05D000100 ORTHO05D004702 2.1e-14 83.2 139 46.0
MBI16_g15565_MAGBIO Magnolia biondii HOM05D000100 ORTHO05D004702 2.1e-14 83.2 141 46.1
Medtr4g082810 Medicago truncatula HOM05D000100 ORTHO05D004702 2.1e-14 83.2 144 40.3
arahy.Tifrunner.gnm1.ann1.5S4EZI Arachis hypogaea HOM05D000100 ORTHO05D004702 6.2e-14 81.6 148 44.6
Prupe.3G260000 Prunus persica HOM05D000100 ORTHO05D004702 6.2e-14 81.6 141 40.4
CANSAT01G2651 Cannabis sativa HOM05D000100 ORTHO05D004702 8.2e-14 81.3 140 43.6
Duzib147G0540 Durio zibethinus HOM05D000100 ORTHO05D004702 8.2e-14 81.3 137 40.1
FAN14G0486 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.1e-13 80.9 129 46.5
FAN14G3309 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.1e-13 80.9 129 46.5
Prupe.3G260100 Prunus persica HOM05D000100 ORTHO05D004702 1.1e-13 80.9 141 39.7
Lj2g0020882 Lotus japonicus HOM05D000100 ORTHO05D004702 1.4e-13 80.5 139 41.0
Manes.09G159600 Manihot esculenta HOM05D000100 ORTHO05D004702 1.4e-13 80.5 151 39.7
RcHm_v2.0_Chr4g0438831 Rosa chinensis HOM05D000100 ORTHO05D004702 2.4e-13 79.7 139 46.0
VMungo0464G1323 Vigna mungo HOM05D000100 ORTHO05D004702 2.4e-13 79.7 145 42.8
Dinv11491 Davidia involucrata HOM05D000100 ORTHO05D004702 3.1e-13 79.3 164 35.4
Eucgr.E03233 Eucalyptus grandis HOM05D000100 ORTHO05D004702 3.1e-13 79.3 142 40.8
Glyma.16G212000 Glycine max HOM05D000100 ORTHO05D004702 3.1e-13 79.3 138 42.0
Oeu062141.1 Olea europaea HOM05D000100 ORTHO05D004702 3.1e-13 79.3 151 38.4
Phvul.004G137900 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 3.1e-13 79.3 143 42.0
QL02p039350 Quercus lobata HOM05D000100 ORTHO05D004702 3.1e-13 79.3 140 38.6
Glyma.09G162400 Glycine max HOM05D000100 ORTHO05D004702 4.1e-13 79.0 138 40.6
Lj4C115T14 Lonicera japonica HOM05D000100 ORTHO05D004702 4.1e-13 79.0 155 34.8
Medtr5g043630 Medicago truncatula HOM05D000100 ORTHO05D004702 4.1e-13 79.0 148 42.6
Sopen02g033250 Solanum pennellii HOM05D000100 ORTHO05D004702 5.3e-13 78.6 148 40.5
TWI75G1492 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 6.9e-13 78.2 150 42.0
Sed0003026 Sechium edule HOM05D000100 ORTHO05D004702 9.0e-13 77.8 138 38.4
Nn4g23330 Nelumbo nucifera HOM05D000100 ORTHO05D004702 1.5e-12 77.0 126 45.2
Thecc.04G090100 Theobroma cacao HOM05D000100 ORTHO05D004702 1.5e-12 77.0 139 39.6
QL03p070950 Quercus lobata HOM05D000100 ORTHO05D004702 2.0e-12 76.6 141 45.4
COL.COLO4_07432 Corchorus olitorius HOM05D000100 ORTHO05D004702 2.6e-12 76.3 142 36.6
TWI75G0577 Tripterygium wilfordii HOM05D000100 ORTHO05D004702 2.6e-12 76.3 151 39.1
CSS0016013 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 3.4e-12 75.9 145 35.9
CSS0029818 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 3.4e-12 75.9 154 38.3
RcHm_v2.0_Chr2g0166671 Rosa chinensis HOM05D000100 ORTHO05D004702 3.4e-12 75.9 153 39.9
RcHm_v2.0_Chr2g0166701 Rosa chinensis HOM05D000100 ORTHO05D004702 3.4e-12 75.9 153 39.9
Gohir.A05G369800 Gossypium hirsutum HOM05D000100 ORTHO05D004702 4.5e-12 75.5 150 36.0
Migut.H00659 Erythranthe guttata HOM05D000100 ORTHO05D004702 5.8e-12 75.1 160 38.1
Gorai.012G050700 Gossypium raimondii HOM05D000100 ORTHO05D004702 7.6e-12 74.7 150 36.7
Peaxi162Scf00166g00826 Petunia axillaris HOM05D000100 ORTHO05D004702 1.3e-11 73.9 142 40.1
SGA_v2.0_scaffold413G51162 Striga asiatica HOM05D000100 ORTHO05D004702 1.3e-11 73.9 127 38.6
Phvul.004G138400 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 2.2e-11 73.2 139 43.9
Phvul.004G138450 Phaseolus vulgaris HOM05D000100 ORTHO05D004702 2.2e-11 73.2 139 43.9
Sed0019811 Sechium edule HOM05D000100 ORTHO05D004702 2.2e-11 73.2 149 39.6
HPP92_026691 Vanilla planifolia HOM05D000100 ORTHO05D004702 2.9e-11 72.8 144 39.6
Eucgr.D01288 Eucalyptus grandis HOM05D000100 ORTHO05D004702 3.8e-11 72.4 141 40.4
Gohir.D04G045500 Gossypium hirsutum HOM05D000100 ORTHO05D004702 3.8e-11 72.4 150 36.0
Zm00001eb280920 Zea mays HOM05D000100 ORTHO05D004702 3.8e-11 72.4 141 39.7
Dinv33804 Davidia involucrata HOM05D000100 ORTHO05D004702 5.0e-11 72.0 132 39.4
Eucgr.E03232 Eucalyptus grandis HOM05D000100 ORTHO05D004702 5.0e-11 72.0 138 40.6
FAN09G3446 Fragaria x ananassa HOM05D000100 ORTHO05D004702 5.0e-11 72.0 156 38.5
FvH4_6g47570 Fragaria vesca HOM05D000100 ORTHO05D004702 6.5e-11 71.6 155 38.7
VMungo0464G0240 Vigna mungo HOM05D000100 ORTHO05D004702 6.5e-11 71.6 138 39.9
ATR0111G030 Amborella trichopoda HOM05D000100 ORTHO05D004702 8.4e-11 71.2 140 42.9
PGR083G1384 Punica granatum HOM05D000100 ORTHO05D004702 1.1e-10 70.9 149 34.9
EL10Ac2g03497 Beta vulgaris HOM05D000100 ORTHO05D004702 1.4e-10 70.5 149 35.6
FAN14G5013 Fragaria x ananassa HOM05D000100 ORTHO05D004702 1.9e-10 70.1 155 38.1
Eucgr.E03236 Eucalyptus grandis HOM05D000100 ORTHO05D004702 2.5e-10 69.7 141 39.0
FvH4_6g47580 Fragaria vesca HOM05D000100 ORTHO05D004702 2.5e-10 69.7 151 38.4
Medtr6g078320 Medicago truncatula HOM05D000100 ORTHO05D004702 2.5e-10 69.7 151 39.1
VMungo0464G0024 Vigna mungo HOM05D000100 ORTHO05D004702 4.2e-10 68.9 139 38.8
Solyc02g088500.1 Solanum lycopersicum HOM05D000100 ORTHO05D004702 5.5e-10 68.6 166 36.1
Os06g0289200 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 7.1e-10 68.2 153 38.6
Cc03_g14880 Coffea canephora HOM05D000009 ORTHO05D004702 1.6e-09 67.0 142 37.3
PGR083G2848 Punica granatum HOM05D000100 ORTHO05D004702 1.6e-09 67.0 146 34.9
CSS0024320 Camellia sinensis var. sinensis HOM05D000100 ORTHO05D004702 2.7e-09 66.2 145 35.9
PGR083G1316 Punica granatum HOM05D000100 ORTHO05D004702 2.7e-09 66.2 149 32.2
PGSC0003DMG400038989 Solanum tuberosum HOM05D000100 ORTHO05D004702 3.5e-09 65.9 165 36.4
Cc03_g14830 Coffea canephora HOM05D000100 ORTHO05D004702 6.1e-09 65.1 157 37.6
Migut.H00660 Erythranthe guttata HOM05D000100 ORTHO05D004702 6.1e-09 65.1 142 35.9
Os06g0288300 Oryza sativa ssp. japonica HOM05D000100 ORTHO05D004702 6.1e-09 65.1 152 38.2
Eucgr.E03235 Eucalyptus grandis HOM05D000100 ORTHO05D004702 7.9e-09 64.7 132 34.8
Sopen02g033210 Solanum pennellii HOM05D000100 ORTHO05D004702 1.3e-08 63.9 166 34.9
Zm00001eb380880 Zea mays HOM05D000100 ORTHO05D004702 3.0e-08 62.8 142 35.9
Zm00001eb381410 Zea mays HOM05D000100 ORTHO05D004702 3.9e-08 62.4 142 35.9
Eucgr.E03231 Eucalyptus grandis HOM05D000100 ORTHO05D004702 5.1e-08 62.0 125 38.4
MD16G1064500 Malus domestica HOM05D000100 ORTHO05D004702 6.7e-08 61.6 134 42.5
Sc11g0004830 Simmondsia chinensis HOM05D000100 ORTHO05D004702 8.7e-08 61.2 137 36.5
Nitab4.5_0000565g0060 Nicotiana tabacum HOM05D000100 ORTHO05D004702 1.9e-07 60.1 149 30.9
Hma1.2p1_1813F.1_g303870 Hydrangea macrophylla HOM05D000100 ORTHO05D004702 2.5e-07 59.7 169 31.4
Eucgr.E03234 Eucalyptus grandis HOM05D000100 ORTHO05D004702 4.3e-07 58.9 145 34.5
AUR62018135 Chenopodium quinoa HOM05D000100 ORTHO05D004702 2.2e-06 56.6 140 34.3
SEGI_10832 Sequoiadendron giganteum HOM05D000100 ORTHO05D000052 3.7e-06 55.8 142 33.8
Migut.H00661 Erythranthe guttata HOM05D000100 ORTHO05D004702 6.3e-06 55.1 162 32.7
PGSC0003DMG400039917 Solanum tuberosum HOM05D000100 ORTHO05D004702 6.3e-06 55.1 136 36.8


User provided reference genes

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