Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 0.0e+00 1397.5 834 100.0
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 4.0e-207 725.7 652 60.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.1e-203 713.4 665 59.1
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.2e-156 556.6 681 49.6
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.7e-155 553.5 651 51.0
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.7e-154 548.9 543 54.9
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.9e-149 533.5 710 46.3
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.6e-147 527.7 629 49.4
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 6.8e-146 522.3 690 48.3
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.3e-144 518.1 628 48.1
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.8e-143 514.2 724 43.2
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 3.1e-143 513.5 703 46.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 4.1e-143 513.1 626 47.1
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.3e-141 508.1 655 45.8
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 8.5e-141 505.4 816 40.8
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 4.2e-140 503.1 808 41.0
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.5e-137 494.6 800 41.8
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 2.6e-137 493.8 670 44.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 3.4e-137 493.4 748 42.1
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.2e-134 485.0 644 45.0
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.2e-134 485.0 727 42.9
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.9e-134 482.6 651 45.0
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 7.7e-134 482.3 651 45.0
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 5.0e-133 479.6 747 43.6
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.1e-132 478.4 740 44.5
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.1e-131 474.2 709 42.6
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 8.0e-131 472.2 718 43.0
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-130 471.9 716 43.3
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 4.4e-129 466.5 706 42.2
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 8.3e-128 462.2 670 44.0
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.4e-127 461.5 697 42.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 4.1e-127 459.9 676 44.5
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.5e-126 456.8 677 42.7
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 4.6e-126 456.4 763 39.2
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.3e-125 454.9 748 38.9
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.3e-125 454.9 653 43.2
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 3.0e-125 453.8 714 42.7
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 6.6e-125 452.6 680 40.9
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 4.3e-124 449.9 883 38.3
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 2.8e-123 447.2 797 39.5
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.4e-121 440.3 703 42.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 4.4e-121 439.9 755 41.1
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 9.8e-121 438.7 731 42.3
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 3.7e-120 436.8 789 38.8
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.4e-119 434.9 710 41.5
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 8.6e-117 425.6 697 39.6
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 1.1e-116 425.2 793 38.3
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.5e-116 424.1 676 40.2
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 3.3e-116 423.7 780 36.3
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 4.3e-116 423.3 737 40.7
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 3.6e-115 420.2 697 40.9
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.4e-114 418.3 669 41.6
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 4.0e-114 416.8 691 41.5
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.8e-114 416.0 736 38.9
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.2e-113 415.2 700 39.1
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.5e-113 414.8 699 39.8
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 9.8e-113 412.1 741 40.4
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 6.4e-112 409.5 759 36.9
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 8.3e-112 409.1 706 39.9
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.9e-111 407.9 698 40.3
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.9e-111 407.9 747 37.5
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.4e-111 407.5 725 38.2
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 2.4e-111 407.5 824 35.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 2.7e-110 404.1 767 38.2
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 4.6e-110 403.3 655 40.0
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.3e-109 401.7 739 38.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.0e-109 400.6 719 40.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.1e-108 398.7 641 42.7
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 1.9e-108 397.9 681 38.5
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 4.3e-108 396.7 835 35.0
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 7.3e-108 396.0 706 38.1
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.2e-107 395.2 664 39.5
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-106 392.1 707 37.8
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 2.3e-106 391.0 681 38.8
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 2.2e-104 384.4 681 38.5
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 2.9e-104 384.0 741 35.5
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.4e-103 380.9 663 38.2
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.4e-103 380.9 747 36.5
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 4.1e-103 380.2 692 37.6
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.3e-101 374.4 693 38.5
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 5.1e-101 373.2 661 37.2
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 6.6e-101 372.9 670 37.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.9e-100 371.3 649 37.4
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 4.3e-100 370.2 661 37.8
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 8.1e-99 365.9 791 36.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 1.4e-98 365.2 740 35.4
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 2.4e-98 364.4 641 37.9
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.0e-98 363.6 682 38.3
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.2e-97 362.1 649 37.8
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.5e-97 361.7 632 38.3
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.2e-96 357.8 658 38.4
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.1e-94 351.3 650 38.6
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 2.7e-94 350.9 740 35.8
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 2.3e-93 347.8 627 36.4
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.3e-93 347.8 670 38.2
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 4.3e-92 343.6 624 38.6
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 3.6e-91 340.5 670 37.6
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 4.8e-91 340.1 670 37.6
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 1.8e-90 338.2 775 35.0
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 5.3e-90 336.7 877 31.5
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.6e-89 334.3 670 37.2
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 3.4e-89 334.0 842 30.9
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-85 322.4 524 40.8
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-85 322.0 777 34.5
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-84 318.5 653 34.0
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.4e-84 316.2 708 37.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 3.6e-83 313.9 739 33.7
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.9e-80 304.3 676 34.9
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 3.8e-80 303.9 647 37.7
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 5.5e-79 300.1 687 34.5
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-77 295.4 881 31.2
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 7.4e-76 289.7 764 31.3
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.8e-64 250.8 304 48.0
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 9.3e-63 246.1 695 28.8
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.0e-57 228.4 703 29.9
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.7e-56 225.3 421 36.6
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 6.5e-56 223.4 267 44.2
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 8.8e-53 213.0 273 50.2
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.7e-48 198.7 289 40.5
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 1.4e-47 195.7 340 37.4
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 3.3e-44 184.5 255 43.1
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.7e-43 182.2 172 52.9
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.1e-42 179.5 179 52.5
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 5.2e-37 160.6 364 34.9
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.6e-33 149.1 422 33.4
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 4.5e-33 147.5 148 52.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 1.6e-30 139.0 838 27.0
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.4e-29 136.0 150 50.0
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 7.5e-28 130.2 336 34.5
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.7e-27 129.0 388 31.7
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 7.0e-26 123.6 139 52.5
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 1.0e-24 119.8 217 38.2
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 4.2e-23 114.4 467 27.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-20 105.9 226 33.6
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 1.9e-15 89.0 214 33.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 2.5e-15 88.6 168 35.1
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.7e-11 75.9 76 52.6
Sabra10G0125200 Salix brachista HOM05D000508 ORTHO05D000371 2.3e-08 65.5 59 55.9
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 4.3e-07 61.2 90 37.8
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 3.6e-06 58.2 63 42.9
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 4.7e-06 57.8 68 47.1
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 6.2e-06 57.4 61 49.2


User provided reference genes

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