Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 1.2e-135 486.5 245 100.0
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 7.9e-79 297.7 294 58.8
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 5.7e-77 291.6 201 74.6
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 8.2e-76 287.7 225 66.7
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.8e-75 286.6 202 72.8
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.8e-75 286.6 236 66.1
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.2e-74 283.9 190 74.7
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.0e-74 283.1 239 64.9
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 4.5e-74 282.0 231 62.8
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 7.7e-74 281.2 224 66.1
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 2.2e-73 279.6 232 63.8
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 2.9e-73 279.3 202 70.8
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 8.5e-73 277.7 192 74.0
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 8.5e-73 277.7 213 67.6
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.1e-72 277.3 217 68.2
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 1.1e-72 277.3 193 71.5
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 7.2e-72 274.6 189 73.5
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 1.6e-71 273.5 163 82.8
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.7e-71 272.7 237 60.3
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 4.7e-71 271.9 203 70.4
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 6.1e-71 271.6 187 73.3
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.1e-71 271.6 159 84.9
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 6.1e-71 271.6 163 81.6
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 8.0e-71 271.2 163 81.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 1.4e-70 270.4 159 84.3
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 2.3e-70 269.6 238 60.9
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 3.0e-70 269.2 167 79.6
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 3.0e-70 269.2 161 82.0
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 6.7e-70 268.1 198 71.2
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 2.0e-69 266.5 161 82.0
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.0e-69 266.5 165 78.2
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 2.6e-69 266.2 197 69.0
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 4.4e-69 265.4 237 60.8
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 4.4e-69 265.4 162 78.4
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.7e-68 263.5 222 60.4
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.3e-68 261.5 219 65.3
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 8.2e-68 261.2 220 59.5
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 1.1e-67 260.8 201 68.2
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.1e-67 260.8 220 61.8
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.4e-67 260.4 198 65.7
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.4e-67 260.4 222 63.5
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 2.4e-67 259.6 159 79.2
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.4e-67 259.6 176 76.1
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 2.4e-67 259.6 192 68.8
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 3.1e-67 259.2 203 65.5
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 4.1e-67 258.8 210 66.2
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 4.1e-67 258.8 186 71.5
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 5.3e-67 258.5 220 60.9
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 2.0e-66 256.5 196 66.3
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 2.0e-66 256.5 189 68.8
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.7e-66 256.1 186 71.0
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 3.5e-66 255.8 207 61.8
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 1.0e-65 254.2 230 59.1
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 1.0e-65 254.2 192 66.7
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 5.0e-65 251.9 222 60.4
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.1e-64 250.8 188 68.6
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-64 250.4 191 66.5
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 1.5e-64 250.4 194 66.0
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.9e-64 250.0 235 55.3
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 9.4e-64 247.7 183 69.4
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.6e-63 246.9 196 63.8
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.6e-63 246.9 209 62.2
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.1e-63 246.5 194 64.4
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 2.1e-63 246.5 169 73.4
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 3.6e-63 245.7 158 74.1
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 4.7e-63 245.4 191 63.4
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 4.7e-63 245.4 175 70.9
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 4.7e-63 245.4 196 63.3
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 4.7e-63 245.4 192 65.6
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 8.0e-63 244.6 191 63.9
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 8.0e-63 244.6 193 64.2
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 8.0e-63 244.6 196 63.3
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 1.0e-62 244.2 172 72.7
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.8e-62 243.4 193 65.8
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 1.8e-62 243.4 164 70.1
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 3.0e-62 242.7 191 64.4
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 4.0e-62 242.3 194 62.9
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 5.2e-62 241.9 183 66.7
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 5.2e-62 241.9 183 66.7
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 6.8e-62 241.5 234 56.8
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 6.8e-62 241.5 191 64.4
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 6.8e-62 241.5 191 64.4
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 6.8e-62 241.5 196 62.8
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 6.8e-62 241.5 183 66.7
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 8.8e-62 241.1 191 63.9
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.0e-61 240.0 192 63.5
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.6e-61 239.6 163 69.3
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 3.4e-61 239.2 189 64.6
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 3.4e-61 239.2 193 62.7
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 4.4e-61 238.8 190 63.7
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.3e-60 237.3 193 62.7
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 4.1e-59 232.3 160 70.0
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.2e-58 230.7 150 79.3
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.7e-58 229.6 156 71.8
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 7.7e-58 228.0 194 63.9
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.1e-56 224.2 188 62.2
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 3.2e-56 222.6 199 62.3
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 7.5e-53 211.5 138 74.6
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 2.7e-50 203.0 181 58.0
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.9e-49 199.5 157 63.7
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 2.1e-47 193.4 185 56.8
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.1e-47 193.4 155 60.6
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.1e-47 193.4 155 60.6
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 8.9e-46 188.0 189 55.6
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 1.4e-43 180.6 156 62.2
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 4.7e-39 165.6 167 53.3
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 6.2e-39 165.2 161 50.9
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.9e-36 156.4 162 52.5
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.6e-34 150.6 162 50.6
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.9e-32 143.7 81 85.2
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 7.3e-32 141.7 92 72.8
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 2.8e-31 139.8 133 51.1
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 4.0e-30 136.0 153 45.8
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 4.0e-30 136.0 82 80.5
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 5.2e-30 135.6 88 76.1
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 2.2e-28 130.2 154 44.8
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 7.8e-26 121.7 154 49.4
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 3.9e-25 119.4 179 37.4
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 5.1e-25 119.0 129 51.2
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 9.5e-24 114.8 114 52.6
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-23 114.4 114 52.6
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-22 111.3 108 56.5
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 6.4e-20 102.1 98 55.1
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 1.4e-19 100.9 69 68.1
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-16 90.9 92 52.2
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 9.6e-16 88.2 145 35.9
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.8e-15 86.7 100 48.0
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 6.9e-14 82.0 118 43.2
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.7e-09 67.4 56 58.9
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 1.7e-09 67.4 94 39.4
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.3e-08 63.2 97 42.3


User provided reference genes

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