Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08906 Nelumbo nucifera HOM05D001193 ORTHO05D001016 9.3e-75 283.5 147 100.0
Nn4g23863 Nelumbo nucifera HOM05D001193 ORTHO05D001016 4.2e-27 125.2 150 52.7
Nn8g39284 Nelumbo nucifera HOM05D001193 ORTHO05D001016 1.8e-17 93.2 120 51.7
Nn3g21170 Nelumbo nucifera HOM05D001193 ORTHO05D001016 5.4e-14 81.6 42 88.1
Nn1g07157 Nelumbo nucifera HOM05D001193 ORTHO05D001016 2.7e-13 79.3 42 85.7
Nn2g10767 Nelumbo nucifera HOM05D001193 ORTHO05D001016 3.5e-13 79.0 42 83.3
arahy.Tifrunner.gnm1.ann1.0E5TT3 Arachis hypogaea HOM05D001193 ORTHO05D001016 2.5e-11 72.8 42 76.2
arahy.Tifrunner.gnm1.ann1.T5VF9E Arachis hypogaea HOM05D001193 ORTHO05D001016 2.5e-11 72.8 42 76.2
Medtr5g027180 Medicago truncatula HOM05D001193 ORTHO05D001016 4.3e-11 72.0 42 76.2
Prupe.5G022200 Prunus persica HOM05D001193 ORTHO05D001016 5.6e-11 71.6 42 71.4
GSVIVG01022610001 Vitis vinifera HOM05D001193 ORTHO05D001016 5.6e-11 71.6 42 73.8
CiPaw.11G102200 Carya illinoinensis HOM05D001193 ORTHO05D001016 7.3e-11 71.2 42 76.2
CiPaw.12G071000 Carya illinoinensis HOM05D001193 ORTHO05D001016 7.3e-11 71.2 42 76.2
Thecc.03G315500 Theobroma cacao HOM05D001193 ORTHO05D001016 7.3e-11 71.2 42 73.8
Duzib068G0065 Durio zibethinus HOM05D001193 ORTHO05D001016 9.5e-11 70.9 42 73.8
RcHm_v2.0_Chr7g0213211 Rosa chinensis HOM05D001193 ORTHO05D001016 9.5e-11 70.9 42 69.0
TWI60G1693 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 1.2e-10 70.5 42 71.4
TAR375G0488 Trochodendron aralioides HOM05D001193 ORTHO05D001016 1.2e-10 70.5 42 73.8
Cfa012578 Carpinus fangiana HOM05D001193 ORTHO05D001016 1.6e-10 70.1 42 71.4
Haze_08081 Corylus avellana HOM05D001193 ORTHO05D001016 1.6e-10 70.1 42 71.4
Hma1.2p1_1179F.1_g264500 Hydrangea macrophylla HOM05D001193 ORTHO05D001016 1.6e-10 70.1 42 71.4
Oeu038586.1 Olea europaea HOM05D001193 ORTHO05D001016 1.6e-10 70.1 42 71.4
Ca_25114_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 2.1e-10 69.7 42 71.4
Haze_08084 Corylus avellana HOM05D001193 ORTHO05D001016 2.1e-10 69.7 42 71.4
FvH4_5g23820 Fragaria vesca HOM05D001193 ORTHO05D001016 2.1e-10 69.7 42 69.0
FAN04G2489 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.1e-10 69.7 42 66.7
FAN18G3519 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.1e-10 69.7 42 69.0
FAN18G4260 Fragaria x ananassa HOM05D001193 ORTHO05D001016 2.1e-10 69.7 42 69.0
Nitab4.5_0001033g0030 Nicotiana tabacum HOM05D001193 ORTHO05D001016 2.8e-10 69.3 41 75.6
TWI34G0473 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 2.8e-10 69.3 42 69.0
Lj7C161T7 Lonicera japonica HOM05D001193 ORTHO05D001016 3.6e-10 68.9 42 66.7
Sabra01G0102400 Salix brachista HOM05D001193 ORTHO05D001016 3.6e-10 68.9 42 71.4
THA.LOC104812763 Tarenaya hassleriana HOM05D001193 ORTHO05D001016 3.6e-10 68.9 42 73.8
CAN.G1269.8 Capsicum annuum HOM05D001193 ORTHO05D001016 4.7e-10 68.6 41 75.6
Ciclev10002116m.g Citrus clementina HOM05D001193 ORTHO05D001016 4.7e-10 68.6 42 69.0
FAN08G0973 Fragaria x ananassa HOM05D001193 ORTHO05D001016 4.7e-10 68.6 42 66.7
FAN13G2524 Fragaria x ananassa HOM05D001193 ORTHO05D001016 4.7e-10 68.6 42 66.7
CDE01G0295 Ceratophyllum demersum HOM05D001193 ORTHO05D001016 6.1e-10 68.2 42 64.3
Cc08_g04370 Coffea canephora HOM05D001193 ORTHO05D001016 6.1e-10 68.2 40 70.0
Lj4g0010733 Lotus japonicus HOM05D001193 ORTHO05D001016 6.1e-10 68.2 42 66.7
Manes.17G008600 Manihot esculenta HOM05D001193 ORTHO05D001016 6.1e-10 68.2 42 69.0
Phvul.002G131900 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 6.1e-10 68.2 42 69.0
Psat2g141400 Pisum sativum HOM05D001193 ORTHO05D001016 6.1e-10 68.2 42 69.0
Potri.001G132800 Populus trichocarpa HOM05D001193 ORTHO05D001016 6.1e-10 68.2 42 71.4
Glyma.01G148300 Glycine max HOM05D001193 ORTHO05D001016 8.0e-10 67.8 42 66.7
Solyc08g075970.3 Solanum lycopersicum HOM05D001193 ORTHO05D001016 8.0e-10 67.8 41 75.6
VMungo1215G0728 Vigna mungo HOM05D001193 ORTHO05D001016 8.0e-10 67.8 42 69.0
Peaxi162Scf00408g00069 Petunia axillaris HOM05D001193 ORTHO05D001016 1.0e-09 67.4 41 73.2
Sopen08g024620 Solanum pennellii HOM05D001193 ORTHO05D001016 1.0e-09 67.4 41 73.2
PGSC0003DMG400030882 Solanum tuberosum HOM05D001193 ORTHO05D001016 1.0e-09 67.4 41 73.2
Atru.chr6.1502 Acer truncatum HOM05D001193 ORTHO05D001016 1.4e-09 67.0 42 69.0
Ah.07g201210 Amaranthus hybridus HOM05D001193 ORTHO05D001016 1.4e-09 67.0 40 72.5
Cpa.g.sc24.59 Carica papaya HOM05D001193 ORTHO05D001016 1.4e-09 67.0 40 70.0
Lj2g0013531 Lotus japonicus HOM05D001193 ORTHO05D001016 1.4e-09 67.0 42 71.4
MD00G1000700 Malus domestica HOM05D001193 ORTHO05D001016 1.4e-09 67.0 42 66.7
MD06G1014200 Malus domestica HOM05D001193 ORTHO05D001016 1.4e-09 67.0 42 66.7
Potri.003G100700 Populus trichocarpa HOM05D001193 ORTHO05D001016 1.4e-09 67.0 42 69.0
QL12p000927 Quercus lobata HOM05D001193 ORTHO05D001016 1.4e-09 67.0 42 64.3
QL12p000933 Quercus lobata HOM05D001193 ORTHO05D001016 1.4e-09 67.0 42 64.3
Psat4g110560 Pisum sativum HOM05D001193 ORTHO05D001016 1.8e-09 66.6 42 66.7
SalBow4G2675 Salvia bowleyana HOM05D001193 ORTHO05D001016 1.8e-09 66.6 42 66.7
vmacro14226 Vaccinium macrocarpon HOM05D001193 ORTHO05D001016 1.8e-09 66.6 42 71.4
AUR62007396 Chenopodium quinoa HOM05D001193 ORTHO05D001016 2.3e-09 66.2 40 67.5
AUR62027334 Chenopodium quinoa HOM05D001193 ORTHO05D001016 2.3e-09 66.2 40 67.5
Glyma.09G212200 Glycine max HOM05D001193 ORTHO05D001016 2.3e-09 66.2 42 69.0
Aqoxy7G00856 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 3.1e-09 65.9 42 66.7
Nitab4.5_0009295g0020 Nicotiana tabacum HOM05D001193 ORTHO05D001016 3.1e-09 65.9 41 73.2
Phvul.003G272800 Phaseolus vulgaris HOM05D001193 ORTHO05D001016 3.1e-09 65.9 42 66.7
VMungo0251G1403 Vigna mungo HOM05D001193 ORTHO05D001016 3.1e-09 65.9 42 66.7
DCAR_028244 Daucus carota HOM05D001193 ORTHO05D001016 5.2e-09 65.1 42 66.7
Glyma.16G104000 Glycine max HOM05D001193 ORTHO05D001016 5.2e-09 65.1 42 64.3
Medtr8g071150 Medicago truncatula HOM05D001193 ORTHO05D001016 5.2e-09 65.1 42 64.3
Oeu061085.1 Olea europaea HOM05D001193 ORTHO05D001016 5.2e-09 65.1 42 64.3
PGR031G0267 Punica granatum HOM05D001193 ORTHO05D001016 5.2e-09 65.1 42 61.9
Migut.E01340 Erythranthe guttata HOM05D001193 ORTHO05D001016 6.8e-09 64.7 40 67.5
Lsat_1_v5_gn_3_20520 Lactuca sativa HOM05D001193 ORTHO05D001016 6.8e-09 64.7 42 64.3
BcaC05g27238 Brassica carinata HOM05D001193 ORTHO05D001016 8.9e-09 64.3 42 64.3
C05p31530 Brassica napus HOM05D001371 ORTHO05D001319 8.9e-09 64.3 42 64.3
BolC5t31877H Brassica oleracea HOM05D001371 ORTHO05D001016 8.9e-09 64.3 42 64.3
AT1G32127 Arabidopsis thaliana HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 66.7
MELO3C013802.2 Cucumis melo HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
CsaV3_3G001120 Cucumis sativus L. HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
Dinv22847 Davidia involucrata HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
Dinv29058 Davidia involucrata HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
Gohir.D08G172000 Gossypium hirsutum HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
Gorai.004G179300 Gossypium raimondii HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
HanXRQChr06g0172841 Helianthus annuus HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
SGA_v2.0_scaffold111G31372 Striga asiatica HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 66.7
TPR.G31321 Trifolium pratense HOM05D001193 ORTHO05D001016 1.2e-08 63.9 42 64.3
EL10Ac5g11949 Beta vulgaris HOM05D001193 ORTHO05D001016 1.5e-08 63.5 40 67.5
Ca_22487_v3 Cicer arietinum L. HOM05D001193 ORTHO05D001016 1.5e-08 63.5 42 64.3
Eucgr.D02606 Eucalyptus grandis HOM05D001193 ORTHO05D001016 1.5e-08 63.5 40 62.5
SGA_v2.0_scaffold144G35873 Striga asiatica HOM05D001193 ORTHO05D001016 1.5e-08 63.5 42 59.5
Actinidia14752 Actinidia chinensis HOM05D001193 ORTHO05D001016 2.0e-08 63.2 42 64.3
Actinidia18151 Actinidia chinensis HOM05D001193 ORTHO05D001016 2.0e-08 63.2 42 64.3
Ah.12g055900 Amaranthus hybridus HOM05D001193 ORTHO05D001016 2.0e-08 63.2 40 65.0
COL.COLO4_16872 Corchorus olitorius HOM05D001193 ORTHO05D001016 2.6e-08 62.8 41 65.9
ECA246G1774 Erigeron canadensis HOM05D001193 ORTHO05D001016 2.6e-08 62.8 42 64.3
Sc22g0001980 Simmondsia chinensis HOM05D001193 ORTHO05D001016 2.6e-08 62.8 40 65.0
AL1G46200 Arabidopsis lyrata HOM05D001193 ORTHO05D001016 3.4e-08 62.4 42 64.3
BraA09t38953Z Brassica rapa HOM05D001371 ORTHO05D001319 3.4e-08 62.4 42 61.9
ECA246G0418 Erigeron canadensis HOM05D001193 ORTHO05D001016 3.4e-08 62.4 42 61.9
Sp1g27790 Schrenkiella parvula HOM05D001193 ORTHO05D001016 3.4e-08 62.4 42 64.3
MSTRG.1779 Avicennia marina HOM05D001193 ORTHO05D001016 4.4e-08 62.0 42 59.5
ClCG10G001100 Citrullus lanatus HOM05D001193 ORTHO05D001016 4.4e-08 62.0 42 61.9
Cc09_g09630 Coffea canephora HOM05D001193 ORTHO05D001016 4.4e-08 62.0 42 64.3
Gohir.A08G150900 Gossypium hirsutum HOM05D001193 ORTHO05D001016 4.4e-08 62.0 42 61.9
BcaC05g27925 Brassica carinata HOM05D001193 ORTHO05D001016 5.8e-08 61.6 42 64.3
C05p39310 Brassica napus HOM05D001193 ORTHO05D001016 5.8e-08 61.6 42 64.3
BolC5t32667H Brassica oleracea HOM05D001193 ORTHO05D001016 5.8e-08 61.6 42 64.3
CSS0001070 Camellia sinensis var. sinensis HOM05D001193 ORTHO05D001016 5.8e-08 61.6 40 67.5
CARHR031470 Cardamine hirsuta HOM05D001193 ORTHO05D001016 5.8e-08 61.6 42 64.3
Thhalv10008495m.g Eutrema salsugineum HOM05D001193 ORTHO05D001016 5.8e-08 61.6 42 64.3
Lalb_Chr05g0215501 Lupinus albus HOM05D001193 ORTHO05D001016 5.8e-08 61.6 42 59.5
BcaB03g13763 Brassica carinata HOM05D001193 ORTHO05D001016 7.5e-08 61.2 42 61.9
Lalb_Chr16g0380831 Lupinus albus HOM05D001193 ORTHO05D001016 9.8e-08 60.8 42 59.5
vmacro00071 Vaccinium macrocarpon HOM05D001193 ORTHO05D001016 9.8e-08 60.8 42 57.1
A09p34070 Brassica napus HOM05D001371 ORTHO05D001319 1.3e-07 60.5 42 59.5
Aa31LG2G13870 Aethionema arabicum HOM05D001193 ORTHO05D001016 1.7e-07 60.1 42 61.9
Oeu031899.1 Olea europaea HOM05D001193 ORTHO05D001016 1.7e-07 60.1 42 61.9
BcaB07g32874 Brassica carinata HOM05D001193 ORTHO05D001016 2.2e-07 59.7 44 61.4
BcaC05g27240 Brassica carinata HOM05D001193 ORTHO05D001016 2.2e-07 59.7 44 61.4
Carub.0001s3044 Capsella rubella HOM05D001193 ORTHO05D001016 2.2e-07 59.7 42 61.9
HanXRQChr17g0537371 Helianthus annuus HOM05D001193 ORTHO05D001016 2.9e-07 59.3 42 59.5
MSTRG.13977 Avicennia marina HOM05D001193 ORTHO05D001016 3.7e-07 58.9 42 59.5
DCAR_004249 Daucus carota HOM05D001193 ORTHO05D001016 3.7e-07 58.9 42 57.1
DCAR_015034 Daucus carota HOM05D001193 ORTHO05D001016 3.7e-07 58.9 42 57.1
Rhsim11G0026800 Rhododendron simsii HOM05D001193 ORTHO05D001016 3.7e-07 58.9 42 59.5
Hund14338 Selenicereus undatus HOM05D001193 ORTHO05D001016 1.1e-06 57.4 40 60.0
Medtr8g071140 Medicago truncatula HOM05D001193 ORTHO05D001016 1.4e-06 57.0 42 57.1
PSO135G0199 Papaver somniferum HOM05D001193 ORTHO05D001016 2.4e-06 56.2 43 55.8
PSO017G4028 Papaver somniferum HOM05D001193 ORTHO05D001016 5.4e-06 55.1 41 51.2
BraA05t21402Z Brassica rapa HOM05D001193 ORTHO05D001016 7.0e-06 54.7 42 57.1
PSO384G4910 Papaver somniferum HOM05D001193 ORTHO05D001016 9.2e-06 54.3 43 53.5
SEGI_08849 Sequoiadendron giganteum HOM05D001193 ORTHO05D001016 9.2e-06 54.3 42 50.0


User provided reference genes

Program Settings