Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08880 Nelumbo nucifera HOM05D006122 ORTHO05D007426 1.3e-35 152.5 77 100.0
Nn1g04517 Nelumbo nucifera HOM05D006122 ORTHO05D007426 2.1e-25 118.6 55 100.0
PGR102G1167 Punica granatum HOM05D006122 ORTHO05D007426 2.3e-24 115.2 55 94.5
Rhsim12G0212300 Rhododendron simsii HOM05D006122 ORTHO05D007426 3.0e-24 114.8 55 92.7
MBI13_g36947_MAGBIO Magnolia biondii HOM05D006122 ORTHO05D007426 1.1e-23 112.8 55 89.1
vmacro22018 Vaccinium macrocarpon HOM05D006122 ORTHO05D007426 1.1e-23 112.8 55 90.9
Eucgr.J02608 Eucalyptus grandis HOM05D006122 ORTHO05D007426 1.5e-23 112.5 55 92.7
Dinv37838 Davidia involucrata HOM05D006122 ORTHO05D007426 1.9e-23 112.1 55 89.1
CSS0025263 Camellia sinensis var. sinensis HOM05D006122 ORTHO05D007426 5.7e-23 110.5 55 87.3
TAR383G0669 Trochodendron aralioides HOM05D006122 ORTHO05D007426 5.7e-23 110.5 55 89.1
Manes.11G015100 Manihot esculenta HOM05D006122 ORTHO05D007426 7.4e-23 110.2 55 90.9
SGA_v2.0_scaffold71G23902 Striga asiatica HOM05D006122 ORTHO05D007426 1.3e-22 109.4 55 87.3
Cc04_g00910 Coffea canephora HOM05D006122 ORTHO05D007426 1.6e-22 109.0 55 87.3
COL.COLO4_30828 Corchorus olitorius HOM05D006122 ORTHO05D007426 1.6e-22 109.0 55 85.5
Ciclev10026416m.g Citrus clementina HOM05D006122 ORTHO05D007426 2.1e-22 108.6 55 85.5
Actinidia26007 Actinidia chinensis HOM05D006122 ORTHO05D007426 2.8e-22 108.2 55 87.3
MSTRG.22530 Avicennia marina HOM05D006122 ORTHO05D007426 3.7e-22 107.8 55 87.3
Os01g0727400 Oryza sativa ssp. japonica HOM05D006122 ORTHO05D007426 4.8e-22 107.5 55 85.5
Thecc.06G126900 Theobroma cacao HOM05D006122 ORTHO05D007426 4.8e-22 107.5 55 85.5
GSVIVG01016699001 Vitis vinifera HOM05D006122 ORTHO05D007426 4.8e-22 107.5 63 77.8
Hma1.2p1_0229F.1_g096920 Hydrangea macrophylla HOM05D006122 ORTHO05D007426 6.3e-22 107.1 55 83.6
TWI59G0171 Tripterygium wilfordii HOM05D006122 ORTHO05D007426 6.3e-22 107.1 55 85.5
Cfa003494 Carpinus fangiana HOM05D006122 ORTHO05D007426 8.2e-22 106.7 55 87.3
Haze_16093 Corylus avellana HOM05D006122 ORTHO05D007426 8.2e-22 106.7 55 87.3
Haze_16097 Corylus avellana HOM05D006122 ORTHO05D007426 8.2e-22 106.7 55 87.3
Prupe.3G035300 Prunus persica HOM05D006122 ORTHO05D007426 1.1e-21 106.3 55 87.3
Migut.I01117 Erythranthe guttata HOM05D006122 ORTHO05D007426 1.4e-21 105.9 63 77.8
Oeu000384.1 Olea europaea HOM05D006122 ORTHO05D007426 1.4e-21 105.9 55 89.1
Peaxi162Scf01003g00013 Petunia axillaris HOM05D006122 ORTHO05D007426 1.4e-21 105.9 55 87.3
Potri.010G076600 Populus trichocarpa HOM05D006122 ORTHO05D007426 1.8e-21 105.5 55 83.6
Duzib160G0673 Durio zibethinus HOM05D006122 ORTHO05D007426 3.1e-21 104.8 55 83.6
Duzib235G1006 Durio zibethinus HOM05D006122 ORTHO05D007426 4.1e-21 104.4 55 81.8
Gohir.A05G138000 Gossypium hirsutum HOM05D006122 ORTHO05D007426 4.1e-21 104.4 55 80.0
Gohir.D05G140100 Gossypium hirsutum HOM05D006122 ORTHO05D007426 4.1e-21 104.4 55 80.0
ECA238G0672 Erigeron canadensis HOM05D006122 ORTHO05D007426 5.3e-21 104.0 55 78.2
MD09G1176300 Malus domestica HOM05D006122 ORTHO05D007426 5.3e-21 104.0 55 83.6
MD17G1150700 Malus domestica HOM05D006122 ORTHO05D007426 5.3e-21 104.0 55 83.6
Sc01g0007910 Simmondsia chinensis HOM05D006122 ORTHO05D007426 6.9e-21 103.6 55 87.3
CANSAT56G0704 Cannabis sativa HOM05D006122 ORTHO05D007426 9.0e-21 103.2 55 80.0
CiPaw.02G133000 Carya illinoinensis HOM05D006122 ORTHO05D007426 1.2e-20 102.8 68 69.1
DCAR_022657 Daucus carota HOM05D006122 ORTHO05D007426 1.2e-20 102.8 55 83.6
Gorai.009G144400 Gossypium raimondii HOM05D006122 ORTHO05D007426 1.5e-20 102.4 55 78.2
EL10Ac5g12242 Beta vulgaris HOM05D006122 ORTHO05D007426 2.0e-20 102.1 55 81.8
AL1G29610 Arabidopsis lyrata HOM05D006122 ORTHO05D007426 4.5e-20 100.9 55 83.6
AUR62018816 Chenopodium quinoa HOM05D006122 ORTHO05D007426 4.5e-20 100.9 55 81.8
Sabra10G0032200 Salix brachista HOM05D000989 ORTHO05D001287 4.5e-20 100.9 53 81.1
Sp1g15490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 4.5e-20 100.9 55 83.6
SpUn0033_0060 Schrenkiella parvula HOM05D006122 ORTHO05D007426 4.5e-20 100.9 55 83.6
Solyc11g005060.2 Solanum lycopersicum HOM05D006122 ORTHO05D007426 5.9e-20 100.5 55 80.0
Sopen11g001060 Solanum pennellii HOM05D006122 ORTHO05D007426 5.9e-20 100.5 55 80.0
ATR0068G105 Amborella trichopoda HOM05D006122 ORTHO05D007426 1.0e-19 99.8 65 70.8
A07p38600 Brassica napus HOM05D006122 ORTHO05D007426 1.0e-19 99.8 67 70.1
HanXRQChr09g0277171 Helianthus annuus HOM05D006122 ORTHO05D007426 1.0e-19 99.8 55 72.7
Zm00001eb361800 Zea mays HOM05D006122 ORTHO05D007426 1.0e-19 99.8 55 80.0
Sed0027026 Sechium edule HOM05D006122 ORTHO05D007426 1.3e-19 99.4 55 76.4
AT1G17350 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 1.7e-19 99.0 55 81.8
Carub.0001s1711 Capsella rubella HOM05D006122 ORTHO05D007426 1.7e-19 99.0 55 81.8
unitig_32.g10995 Utricularia gibba HOM05D006122 ORTHO05D007426 1.7e-19 99.0 68 67.6
Cpa.g.sc25.169 Carica papaya HOM05D006122 ORTHO05D007426 2.2e-19 98.6 55 81.8
Thhalv10008577m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 2.2e-19 98.6 67 71.6
Aqoxy301s003 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 2.9e-19 98.2 55 72.7
Aqoxy3G03460 Aquilegia oxysepala HOM05D006122 ORTHO05D007426 2.9e-19 98.2 55 72.7
CARHR017950 Cardamine hirsuta HOM05D006122 ORTHO05D007426 2.9e-19 98.2 55 80.0
BcaB03g14993 Brassica carinata HOM05D006122 ORTHO05D007426 3.8e-19 97.8 67 68.7
CsaV3_4G002610 Cucumis sativus L. HOM05D006122 ORTHO05D007426 3.8e-19 97.8 55 74.5
Hund14473 Selenicereus undatus HOM05D006122 ORTHO05D007426 3.8e-19 97.8 72 69.4
PSO063G2922 Papaver somniferum HOM05D006122 ORTHO05D007426 5.0e-19 97.4 55 76.4
C06p46770 Brassica napus HOM05D006122 ORTHO05D007426 6.5e-19 97.1 67 68.7
BolC6t39721H Brassica oleracea HOM05D006122 ORTHO05D007426 6.5e-19 97.1 67 68.7
BraA07t31418Z Brassica rapa HOM05D006122 ORTHO05D007426 6.5e-19 97.1 67 68.7
Lsat_1_v5_gn_8_4120 Lactuca sativa HOM05D006122 ORTHO05D007426 8.5e-19 96.7 55 72.7
PSO832G0128 Papaver somniferum HOM05D006122 ORTHO05D007426 1.1e-18 96.3 55 74.5
RcHm_v2.0_Chr2g0146911 Rosa chinensis HOM05D006122 ORTHO05D007426 1.1e-18 96.3 55 85.5
HPP92_026812 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.4e-18 95.9 55 76.4
AT1G72420 Arabidopsis thaliana HOM05D006122 ORTHO05D007426 2.5e-18 95.1 72 66.7
Sp5g27490 Schrenkiella parvula HOM05D006122 ORTHO05D007426 2.5e-18 95.1 67 68.7
CAN.G1227.1 Capsicum annuum HOM05D006122 ORTHO05D007426 3.2e-18 94.7 55 76.4
Carub.0002s1927 Capsella rubella HOM05D006122 ORTHO05D007426 4.2e-18 94.4 67 68.7
Aa31LG4G2750 Aethionema arabicum HOM05D006122 ORTHO05D007426 5.5e-18 94.0 72 63.9
BcaNung07320 Brassica carinata HOM05D006122 ORTHO05D007426 5.5e-18 94.0 72 63.9
C05p15780 Brassica napus HOM05D006122 ORTHO05D007426 5.5e-18 94.0 72 63.9
BolC5t30283H Brassica oleracea HOM05D006122 ORTHO05D007426 5.5e-18 94.0 72 63.9
Thhalv10019098m.g Eutrema salsugineum HOM05D006122 ORTHO05D007426 5.5e-18 94.0 67 67.2
SalBow5G2173 Salvia bowleyana HOM05D006122 ORTHO05D007426 5.5e-18 94.0 54 75.9
THA.LOC104812266 Tarenaya hassleriana HOM05D006122 ORTHO05D007426 7.2e-18 93.6 55 74.5
BraA06t24484Z Brassica rapa HOM05D006122 ORTHO05D007426 1.2e-17 92.8 72 62.5
A06p13310 Brassica napus HOM05D006122 ORTHO05D007426 1.6e-17 92.4 72 61.1
FvH4_6g35380 Fragaria vesca HOM05D006122 ORTHO05D007426 1.6e-17 92.4 55 80.0
FAN14G0976 Fragaria x ananassa HOM05D006122 ORTHO05D007426 1.6e-17 92.4 55 80.0
QL05p002004 Quercus lobata HOM05D006122 ORTHO05D007426 1.8e-16 89.0 69 63.8
TPR.G16670 Trifolium pratense HOM05D006122 ORTHO05D007426 6.7e-16 87.0 55 69.1
Lalb_Chr10g0101271 Lupinus albus HOM05D006122 ORTHO05D007426 8.7e-16 86.7 55 70.9
Medtr8g022330 Medicago truncatula HOM05D006122 ORTHO05D007426 1.1e-15 86.3 55 69.1
AUR62007187 Chenopodium quinoa HOM05D006122 ORTHO05D007426 7.4e-15 83.6 91 49.5
arahy.Tifrunner.gnm1.ann1.DIA1Z1 Arachis hypogaea HOM05D006122 ORTHO05D007426 9.7e-15 83.2 55 61.8
arahy.Tifrunner.gnm1.ann1.JC3XNH Arachis hypogaea HOM05D006122 ORTHO05D007426 9.7e-15 83.2 55 61.8
CARHR065320 Cardamine hirsuta HOM05D006122 ORTHO05D007426 1.6e-14 82.4 67 58.2
Psat4g219480 Pisum sativum HOM05D006122 ORTHO05D007426 1.6e-14 82.4 55 63.6
Phvul.010G126800 Phaseolus vulgaris HOM05D006122 ORTHO05D007426 6.3e-14 80.5 55 65.5
Glyma.07G043200 Glycine max HOM05D006122 ORTHO05D007426 8.2e-14 80.1 55 65.5
Glyma.16G011600 Glycine max HOM05D006122 ORTHO05D007426 8.2e-14 80.1 55 65.5
Nitab4.5_0001168g0090 Nicotiana tabacum HOM05D006122 ORTHO05D007426 8.2e-14 80.1 37 89.2
Lj5A31T62 Lonicera japonica HOM05D006122 ORTHO05D007426 1.1e-13 79.7 38 86.8
VMungo0331G0398 Vigna mungo HOM05D006122 ORTHO05D007426 1.4e-13 79.3 55 65.5
CDE02G1839 Ceratophyllum demersum HOM05D006122 ORTHO05D007426 2.4e-13 78.6 45 75.6
FAN09G0799 Fragaria x ananassa HOM05D006122 ORTHO05D007426 3.1e-13 78.2 38 86.8
Ah.07g199940 Amaranthus hybridus HOM05D006122 ORTHO05D007426 4.1e-13 77.8 52 71.2
Lj3g0011237 Lotus japonicus HOM05D006122 ORTHO05D007426 5.3e-13 77.4 73 50.7
MELO3C017781.2 Cucumis melo HOM05D006122 ORTHO05D007426 1.2e-12 76.3 38 81.6
Actinidia31156 Actinidia chinensis HOM05D006122 ORTHO05D007426 1.5e-12 75.9 42 76.2
Ca_23414_v3 Cicer arietinum L. HOM05D006122 ORTHO05D007426 5.9e-12 73.9 44 70.5
HPP92_000787 Vanilla planifolia HOM05D006122 ORTHO05D007426 1.9e-10 68.9 38 76.3
AagrBONN_evm.TU.Sc2ySwM_362.2335 Anthoceros agrestis HOM05D006122 ORTHO05D007426 4.6e-09 64.3 52 53.8
Pp3c3_21840 Physcomitrium patens HOM05D006122 ORTHO05D007426 4.4e-07 57.8 59 44.1
Mapoly0158s0026 Marchantia polymorpha HOM05D006122 ORTHO05D007426 5.7e-07 57.4 51 43.1


User provided reference genes

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