Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 6.8e-50 200.3 96 100.0
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.2e-23 111.7 134 53.0
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 7.3e-20 100.5 64 71.9
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 1.4e-18 96.3 64 68.8
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 3.1e-18 95.1 64 68.8
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 4.0e-18 94.7 63 69.8
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 5.2e-18 94.4 70 65.7
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 6.8e-18 94.0 70 61.4
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 1.2e-17 93.2 65 69.2
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.5e-17 92.8 66 68.2
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.5e-17 92.8 66 68.2
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 1.5e-17 92.8 64 71.9
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.5e-17 92.8 64 70.3
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.5e-17 92.8 64 70.3
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.0e-17 92.4 76 61.8
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.0e-17 92.4 76 61.8
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.6e-17 92.0 64 67.2
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 2.6e-17 92.0 64 70.3
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 2.6e-17 92.0 64 68.8
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 4.4e-17 91.3 64 70.3
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 4.4e-17 91.3 64 65.6
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 5.8e-17 90.9 64 68.8
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 9.9e-17 90.1 64 68.8
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 1.3e-16 89.7 64 67.2
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.3e-16 89.7 64 65.6
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.3e-16 89.7 64 65.6
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 2.2e-16 89.0 64 65.6
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 2.2e-16 89.0 63 63.5
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.9e-16 88.6 64 65.6
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 2.9e-16 88.6 64 68.8
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 3.7e-16 88.2 64 68.8
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 4.9e-16 87.8 77 62.3
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 6.4e-16 87.4 64 64.1
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 1.1e-15 86.7 64 67.2
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 4.1e-15 84.7 65 67.7
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 4.1e-15 84.7 63 61.9
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 2.1e-14 82.4 73 57.5
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 2.7e-14 82.0 62 66.1
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 2.7e-14 82.0 62 62.9
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 6.0e-14 80.9 64 64.1
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 2.3e-13 79.0 64 62.5
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.3e-13 79.0 64 62.5
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 6.6e-13 77.4 63 63.5
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 8.6e-13 77.0 63 61.9
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 1.5e-12 76.3 63 60.3
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.9e-12 75.9 76 56.6
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.5e-12 75.5 68 60.3
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 3.3e-12 75.1 76 56.6
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.3e-12 74.7 51 66.7
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 5.6e-12 74.3 76 56.6
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 9.6e-12 73.6 63 57.1
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.2e-11 73.2 77 51.9
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 1.2e-11 73.2 66 62.1
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.6e-11 72.8 62 58.1
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 2.1e-11 72.4 63 63.5
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 2.8e-11 72.0 70 52.9
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 3.6e-11 71.6 64 64.1
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 6.2e-11 70.9 72 54.2
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 6.2e-11 70.9 64 64.1
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 1.1e-10 70.1 77 51.9
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 1.4e-10 69.7 70 51.4
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.4e-10 68.9 64 56.2
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 3.1e-10 68.6 63 54.0
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 4.0e-10 68.2 64 57.8
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 6.8e-10 67.4 70 51.4
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 6.8e-10 67.4 64 57.8
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 1.2e-09 66.6 70 52.9
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 2.6e-09 65.5 66 56.1
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.6e-09 65.5 53 60.4
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 3.4e-09 65.1 64 48.4
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 4.4e-09 64.7 63 52.4
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 5.8e-09 64.3 76 44.7
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 5.8e-09 64.3 63 52.4
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 5.8e-09 64.3 63 52.4
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 5.8e-09 64.3 70 52.9
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 5.8e-09 64.3 50 62.0
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 9.9e-09 63.5 64 53.1
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.3e-08 63.2 63 50.8
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 1.3e-08 63.2 70 48.6
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 1.3e-08 63.2 44 68.2
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 1.7e-08 62.8 70 52.9
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 2.2e-08 62.4 64 54.7
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 2.9e-08 62.0 70 48.6
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 3.8e-08 61.6 70 47.1
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 1.1e-07 60.1 63 49.2
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.1e-07 60.1 62 53.2
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 1.1e-07 60.1 55 50.9
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 3.2e-07 58.5 76 42.1
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 3.2e-07 58.5 70 50.0
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 5.4e-07 57.8 63 49.2
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 7.1e-07 57.4 64 51.6
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 1.2e-06 56.6 66 47.0
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.2e-06 56.6 69 44.9
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 1.2e-06 56.6 69 44.9
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.2e-06 56.6 58 50.0
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 1.6e-06 56.2 69 46.4
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.6e-06 56.2 62 50.0
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 2.1e-06 55.8 53 50.9
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 2.7e-06 55.5 70 45.7
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 2.7e-06 55.5 69 44.9
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 3.5e-06 55.1 63 44.4


User provided reference genes

Program Settings