Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08779 Nelumbo nucifera HOM05D000170 ORTHO05D018666 1.7e-64 249.2 131 100.0
Nn1g02666 Nelumbo nucifera HOM05D000170 ORTHO05D018666 2.7e-41 172.2 124 77.4
Nn4g24441 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.3e-30 136.7 92 77.2
Nn6g35184 Nelumbo nucifera HOM05D000170 ORTHO05D007205 3.1e-29 132.1 92 77.2
Aqoxy1G01045 Aquilegia oxysepala HOM05D000170 ORTHO05D007205 1.6e-25 119.8 194 43.3
Nn1g04240 Nelumbo nucifera HOM05D000170 ORTHO05D007205 3.5e-25 118.6 90 73.3
TAR636G2091 Trochodendron aralioides HOM05D000170 ORTHO05D007205 4.6e-25 118.2 192 41.7
Haze_19465 Corylus avellana HOM05D000170 ORTHO05D007205 3.7e-22 108.6 91 62.6
Manes.08G016400 Manihot esculenta HOM05D000170 ORTHO05D007205 6.2e-22 107.8 90 65.6
COL.COLO4_22244 Corchorus olitorius HOM05D000170 ORTHO05D007205 8.1e-22 107.5 102 53.9
CiPaw.09G004600 Carya illinoinensis HOM05D000170 ORTHO05D007205 1.1e-21 107.1 198 40.4
QL07p041523 Quercus lobata HOM05D000170 ORTHO05D007205 1.4e-21 106.7 89 64.0
Thecc.05G074200 Theobroma cacao HOM05D000170 ORTHO05D007205 1.4e-21 106.7 195 40.5
Sabra06G0094400 Salix brachista HOM05D000170 ORTHO05D007205 1.8e-21 106.3 89 65.2
Atru.chr8.1713 Acer truncatum HOM05D000170 ORTHO05D007205 3.1e-21 105.5 197 41.1
HanXRQChr15g0477651 Helianthus annuus HOM05D000170 ORTHO05D007205 4.0e-21 105.1 189 41.3
PSO063G2881 Papaver somniferum HOM05D000170 ORTHO05D007205 4.0e-21 105.1 106 60.4
PGSC0003DMG400008591 Solanum tuberosum HOM05D000170 ORTHO05D007205 4.0e-21 105.1 92 64.1
Nitab4.5_0000725g0060 Nicotiana tabacum HOM05D000170 ORTHO05D007205 5.3e-21 104.8 97 60.8
Lsat_1_v5_gn_2_19801 Lactuca sativa HOM05D000170 ORTHO05D007205 6.9e-21 104.4 101 56.4
Potri.006G120000 Populus trichocarpa HOM05D000170 ORTHO05D007205 9.0e-21 104.0 89 65.2
QL07p041500 Quercus lobata HOM05D000170 ORTHO05D007205 9.0e-21 104.0 106 54.7
Aa31LG10G8310 Aethionema arabicum HOM05D000170 ORTHO05D007205 1.5e-20 103.2 124 50.8
ClCG10G019690 Citrullus lanatus HOM05D000170 ORTHO05D007205 2.6e-20 102.4 89 66.3
Sed0014983 Sechium edule HOM05D000170 ORTHO05D007205 2.6e-20 102.4 81 70.4
CAN.G729.6 Capsicum annuum HOM05D000170 ORTHO05D007205 4.5e-20 101.7 94 61.7
FvH4_6g17130 Fragaria vesca HOM05D000170 ORTHO05D007205 4.5e-20 101.7 93 63.4
FAN02G3292 Fragaria x ananassa HOM05D000170 ORTHO05D007205 4.5e-20 101.7 93 63.4
FAN14G2479 Fragaria x ananassa HOM05D000170 ORTHO05D007205 4.5e-20 101.7 93 63.4
Lalb_Chr25g0285571 Lupinus albus HOM05D000170 ORTHO05D007205 4.5e-20 101.7 92 60.9
BcaB01g00314 Brassica carinata HOM05D000170 ORTHO05D007205 5.8e-20 101.3 122 50.0
MELO3C009403.2 Cucumis melo HOM05D000170 ORTHO05D007205 5.8e-20 101.3 87 67.8
CsaV3_3G036520 Cucumis sativus L. HOM05D000170 ORTHO05D007205 7.6e-20 100.9 86 67.4
TWI53G1443 Tripterygium wilfordii HOM05D000170 ORTHO05D007205 7.6e-20 100.9 90 60.0
CANSAT78G0870 Cannabis sativa HOM05D000170 ORTHO05D007205 1.0e-19 100.5 195 40.5
Gohir.A04G069100 Gossypium hirsutum HOM05D000170 ORTHO05D007205 1.0e-19 100.5 101 61.4
Medtr2g072790 Medicago truncatula HOM05D000170 ORTHO05D007205 1.0e-19 100.5 105 54.3
Lj3g0000213 Lotus japonicus HOM05D000170 ORTHO05D007205 1.3e-19 100.1 85 62.4
RcHm_v2.0_Chr3g0471211 Rosa chinensis HOM05D000170 ORTHO05D007205 1.3e-19 100.1 88 64.8
Carub.0005s1967 Capsella rubella HOM05D000170 ORTHO05D007205 1.7e-19 99.8 98 58.2
Ca_03451_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 2.2e-19 99.4 85 63.5
Gohir.D04G107400 Gossypium hirsutum HOM05D000170 ORTHO05D007205 2.2e-19 99.4 101 59.4
Thhalv10023542m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 3.8e-19 98.6 102 56.9
Gorai.009G411600 Gossypium raimondii HOM05D000170 ORTHO05D007205 3.8e-19 98.6 97 58.8
MD12G1103500 Malus domestica HOM05D000170 ORTHO05D007205 3.8e-19 98.6 99 56.6
Prupe.7G123600 Prunus persica HOM05D000170 ORTHO05D007205 3.8e-19 98.6 97 60.8
PGR004G2213 Punica granatum HOM05D000170 ORTHO05D007205 3.8e-19 98.6 98 57.1
FAN05G1040 Fragaria x ananassa HOM05D000170 ORTHO05D007205 4.9e-19 98.2 93 61.3
FAN05G4883 Fragaria x ananassa HOM05D000170 ORTHO05D007205 4.9e-19 98.2 93 61.3
Psat1g007920 Pisum sativum HOM05D000170 ORTHO05D007205 4.9e-19 98.2 85 63.5
Nn4g25725 Nelumbo nucifera HOM05D000170 ORTHO05D018666 6.5e-19 97.8 68 77.9
VMungo1080G0369 Vigna mungo HOM05D000170 ORTHO05D007205 6.5e-19 97.8 85 56.5
AL5G34020 Arabidopsis lyrata HOM05D000170 ORTHO05D007205 8.4e-19 97.4 92 60.9
AT3G53140 Arabidopsis thaliana HOM05D000170 ORTHO05D007205 1.1e-18 97.1 92 60.9
Duzib093G0643 Durio zibethinus HOM05D000170 ORTHO05D007205 1.1e-18 97.1 102 53.9
TPR.G27302 Trifolium pratense HOM05D000170 ORTHO05D007205 1.1e-18 97.1 87 60.9
arahy.Tifrunner.gnm1.ann1.DK6BL4 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.4e-18 96.7 102 53.9
arahy.Tifrunner.gnm1.ann1.F8BKZV Arachis hypogaea HOM05D000170 ORTHO05D007205 1.4e-18 96.7 102 53.9
Sopen10g035230 Solanum pennellii HOM05D000170 ORTHO05D007205 1.4e-18 96.7 93 59.1
THA.LOC104818584 Tarenaya hassleriana HOM05D000170 ORTHO05D007205 1.4e-18 96.7 93 59.1
Phvul.005G070300 Phaseolus vulgaris HOM05D000170 ORTHO05D007205 1.9e-18 96.3 93 55.9
Thhalv10010488m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 2.5e-18 95.9 92 59.8
Cfa016464 Carpinus fangiana HOM05D000170 ORTHO05D007205 4.2e-18 95.1 75 65.3
Peaxi162Scf00017g00118 Petunia axillaris HOM05D000170 ORTHO05D007205 4.2e-18 95.1 152 47.4
Psat3g060280 Pisum sativum HOM05D000170 ORTHO05D007205 5.5e-18 94.7 88 56.8
CARHR162990 Cardamine hirsuta HOM05D000170 ORTHO05D007205 7.1e-18 94.4 198 37.4
CAN.G729.7 Capsicum annuum HOM05D000170 ORTHO05D007205 1.2e-17 93.6 88 56.8
Psat3g060200 Pisum sativum HOM05D000170 ORTHO05D007205 1.2e-17 93.6 88 55.7
Sc02g0001380 Simmondsia chinensis HOM05D000170 ORTHO05D007205 1.2e-17 93.6 93 53.8
Glyma.13G263200 Glycine max HOM05D000170 ORTHO05D007205 1.6e-17 93.2 85 60.0
Nn2g10706 Nelumbo nucifera HOM05D000170 ORTHO05D018666 2.1e-17 92.8 69 72.5
Sp5g09180 Schrenkiella parvula HOM05D000170 ORTHO05D007205 2.1e-17 92.8 199 37.2
Solyc10g085830.2 Solanum lycopersicum HOM05D000170 ORTHO05D007205 6.0e-17 91.3 93 54.8
Glyma.15G241100 Glycine max HOM05D000170 ORTHO05D007205 1.3e-16 90.1 86 57.0
BraA04t16330Z Brassica rapa HOM05D000170 ORTHO05D007205 1.8e-16 89.7 196 37.2
Cpa.g.sc5.132 Carica papaya HOM05D000170 ORTHO05D007205 1.8e-16 89.7 89 55.1
Ciclev10013655m.g Citrus clementina HOM05D000170 ORTHO05D007205 2.3e-16 89.4 74 66.2
A04p06250 Brassica napus HOM05D000170 ORTHO05D007205 3.0e-16 89.0 196 37.2
Ca_16937_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 3.9e-16 88.6 81 59.3
TPR.G34644 Trifolium pratense HOM05D000170 ORTHO05D007205 3.9e-16 88.6 88 53.4
BcaC02g09181 Brassica carinata HOM05D000170 ORTHO05D007205 6.7e-16 87.8 196 36.7
C04p39760 Brassica napus HOM05D000170 ORTHO05D007205 6.7e-16 87.8 196 36.7
BolC4t25548H Brassica oleracea HOM05D000170 ORTHO05D007205 6.7e-16 87.8 196 36.7
AUR62029078 Chenopodium quinoa HOM05D000170 ORTHO05D007205 3.3e-15 85.5 85 52.9
Medtr3g096050 Medicago truncatula HOM05D000170 ORTHO05D007205 5.7e-15 84.7 88 52.3
EL10Ac7g16712 Beta vulgaris HOM05D000170 ORTHO05D007205 7.4e-15 84.3 85 52.9
AUR62026973 Chenopodium quinoa HOM05D000170 ORTHO05D007205 9.6e-15 84.0 85 51.8
arahy.Tifrunner.gnm1.ann1.I1E7E1 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.3e-14 83.6 79 57.0
Lalb_Chr08g0238401 Lupinus albus HOM05D000170 ORTHO05D007205 1.3e-14 83.6 81 54.3
arahy.Tifrunner.gnm1.ann1.S7NHY3 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.6e-14 83.2 79 57.0
Medtr3g096070 Medicago truncatula HOM05D000170 ORTHO05D007205 1.6e-14 83.2 88 51.1
arahy.Tifrunner.gnm1.ann1.BIS5KZ Arachis hypogaea HOM05D000170 ORTHO05D007205 2.8e-14 82.4 83 56.6
arahy.Tifrunner.gnm1.ann1.D2PEMM Arachis hypogaea HOM05D000170 ORTHO05D007205 2.8e-14 82.4 83 56.6
CDE06G0899 Ceratophyllum demersum HOM05D000170 ORTHO05D007205 3.7e-14 82.0 91 52.7
Ah.08g211320 Amaranthus hybridus HOM05D000170 ORTHO05D007205 4.8e-14 81.6 95 47.4
Dinv37352 Davidia involucrata HOM05D000170 ORTHO05D007205 4.8e-14 81.6 58 69.0
Nn3g17961 Nelumbo nucifera HOM05D000170 ORTHO05D007205 6.3e-14 81.3 154 40.9
Nn1g01182 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.1e-13 80.5 66 65.2
SEGI_14789 Sequoiadendron giganteum HOM05D000170 ORTHO05D007205 2.0e-12 76.3 122 40.2
BcaB02g08534 Brassica carinata HOM05D000170 ORTHO05D007205 5.9e-12 74.7 82 56.1
Sopen10g035240 Solanum pennellii HOM05D000170 ORTHO05D007205 2.9e-11 72.4 68 57.4
Nitab4.5_0002818g0130 Nicotiana tabacum HOM05D000170 ORTHO05D018666 1.4e-10 70.1 54 68.5
Ciclev10023355m.g Citrus clementina HOM05D000170 ORTHO05D007205 2.1e-09 66.2 55 61.8
Os02g0823400 Oryza sativa ssp. japonica HOM05D000170 ORTHO05D007205 3.9e-08 62.0 88 40.9
Solyc10g085840.1 Solanum lycopersicum HOM05D000170 ORTHO05D018666 3.9e-08 62.0 68 51.5
Ciclev10029876m.g Citrus clementina HOM05D000170 ORTHO05D007205 1.1e-07 60.5 41 68.3
Zm00001eb190920 Zea mays HOM05D000170 ORTHO05D007205 4.3e-07 58.5 71 46.5


User provided reference genes

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